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Title: Crystal structure of human MDM2 in complex with D-peptide inhibitor (DPMI-alpha)      
description:
E3 ubiquitin-protein ligase Mdm2 (E.C.6.3.2.-), D-peptide inhibitor
privacy:
not applicable
aggregation:
instance of dataset
ID:
PDB:3LNJ
refinement:
curated
keywords:
LIGASE/LIGASE INHIBITOR
MDM2
p53 binding domain
D-peptide activator of MDM2
MDM2-D-peptide complex
Host-virus interaction
Ligase
Metal-binding
Nucleus
Phosphoprotein
Proto-oncogene
Ubl conjugation pathway
Zinc-finger
LIGASE-LIGASE INHIBITOR complex
creators:
Liu, M.
Pazgier, M.
Li, C.
Yuan, W.
Lu, W.
availability:
available
types:
structure
authors:
Liu, M.
Pazgier, M.
Li, C.
Yuan, W.
Lu, W.
alternateID:
doi:10.1002/anie.201000329
year:
2010
ID: pmid:20449836
title:
A left-handed solution to peptide inhibition of the p53-MDM2 interaction.
formula:
C4 H9 N O3
name:
THREONINE
roles:
chemical component
formula:
C6 H13 N O2
name:
LEUCINE
roles:
chemical component
formula:
C5 H11 N O2
name:
VALINE
roles:
chemical component
formula:
C6 H15 N4 O2 1
name:
ARGININE
roles:
chemical component
formula:
C5 H9 N O2
name:
PROLINE
roles:
chemical component
formula:
C6 H15 N2 O2 1
name:
LYSINE
roles:
chemical component
formula:
C3 H7 N O3
name:
SERINE
roles:
chemical component
formula:
C2 H5 N O2
name:
GLYCINE
roles:
chemical component
formula:
C3 H7 N O2
name:
ALANINE
roles:
chemical component
formula:
C5 H10 N2 O3
name:
GLUTAMINE
roles:
chemical component
formula:
C4 H7 N O4
name:
ASPARTIC ACID
roles:
chemical component
formula:
C9 H11 N O3
name:
TYROSINE
roles:
chemical component
formula:
C5 H11 N O2 S
name:
METHIONINE
roles:
chemical component
formula:
C5 H9 N O4
name:
GLUTAMIC ACID
roles:
chemical component
formula:
C9 H11 N O2
name:
PHENYLALANINE
roles:
chemical component
formula:
C6 H13 N O2
name:
ISOLEUCINE
roles:
chemical component
formula:
C6 H10 N3 O2 1
name:
HISTIDINE
roles:
chemical component
formula:
C3 H7 N O2 S
name:
CYSTEINE
roles:
chemical component
formula:
C4 H8 N2 O3
name:
ASPARAGINE
roles:
chemical component
formula:
C4 H8 N2 O3
name:
D-ASPARAGINE
roles:
chemical component
formula:
C11 H12 N2 O2
name:
D-TRYPTOPHAN
roles:
chemical component
formula:
C9 H11 N O3
name:
D-TYROSINE
roles:
chemical component
formula:
C3 H7 N O2
name:
D-ALANINE
roles:
chemical component
formula:
C6 H13 N O2
name:
D-LEUCINE
roles:
chemical component
formula:
C5 H9 N O4
name:
D-GLUTAMIC ACID
roles:
chemical component
formula:
C6 H14 N2 O2
name:
D-LYSINE
roles:
chemical component
formula:
C6 H15 N4 O2 1
name:
D-ARGININE
roles:
chemical component
formula:
O4 S -2
name:
SULFATE ION
roles:
chemical component
formula:
CL -1
name:
CHLORIDE ION
roles:
chemical component
formula:
C3 H8 O3
name:
GLYCEROL
roles:
chemical component
formula:
H2 O
name:
WATER
roles:
chemical component
formula:
C4 H9 N O3
name:
D-THREONINE
roles:
chemical component
name:
X-RAY DIFFRACTION
ID:
pdb:3LNJ
ID:
rcsb:RCSB057497
accessURL: https://files.rcsb.org/download/3LNJ.xml.gz
storedIn:
Protein Data Bank
qualifier:
gzip compressed
license:
Data files contained in the PDB archive (ftp://ftp.wwpdb.org) are free of all copyright restrictions and made fully and freely available for both non-commercial and commercial use. Users of the data should attribute the original authors of that structural data. By using the materials available in the PDB archive, the user agrees to abide by the conditions described in the PDB Advisory Notice.
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accessType:
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authentication:
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authorization:
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accessURL: https://files.rcsb.org/download/3LNJ.pdb.gz
storedIn:
Protein Data Bank
qualifier:
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license:
Data files contained in the PDB archive (ftp://ftp.wwpdb.org) are free of all copyright restrictions and made fully and freely available for both non-commercial and commercial use. Users of the data should attribute the original authors of that structural data. By using the materials available in the PDB archive, the user agrees to abide by the conditions described in the PDB Advisory Notice.
format:
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accessType:
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authentication:
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authorization:
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accessURL: https://files.rcsb.org/download/3LNJ.cif.gz
storedIn:
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qualifier:
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license:
Data files contained in the PDB archive (ftp://ftp.wwpdb.org) are free of all copyright restrictions and made fully and freely available for both non-commercial and commercial use. Users of the data should attribute the original authors of that structural data. By using the materials available in the PDB archive, the user agrees to abide by the conditions described in the PDB Advisory Notice.
format:
PDBx/mmCIF
accessType:
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authentication:
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authorization:
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accessURL: http://www.rcsb.org/pdb/download/downloadFile.do?fileFormat=FASTA&compression=NO&structureId=3LNJ
storedIn:
Protein Data Bank
license:
Data files contained in the PDB archive (ftp://ftp.wwpdb.org) are free of all copyright restrictions and made fully and freely available for both non-commercial and commercial use. Users of the data should attribute the original authors of that structural data. By using the materials available in the PDB archive, the user agrees to abide by the conditions described in the PDB Advisory Notice.
format:
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accessType:
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authentication:
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authorization:
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accessURL: https://files.rcsb.org/download/3LNJ-sf.cif.gz
storedIn:
Protein Data Bank
qualifier:
gzip compressed
license:
Data files contained in the PDB archive (ftp://ftp.wwpdb.org) are free of all copyright restrictions and made fully and freely available for both non-commercial and commercial use. Users of the data should attribute the original authors of that structural data. By using the materials available in the PDB archive, the user agrees to abide by the conditions described in the PDB Advisory Notice.
format:
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accessType:
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authentication:
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authorization:
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accessURL: https://files.rcsb.org/download/3LNJ.pdb1.gz
storedIn:
Protein Data Bank
qualifier:
gzip compressed
license:
Data files contained in the PDB archive (ftp://ftp.wwpdb.org) are free of all copyright restrictions and made fully and freely available for both non-commercial and commercial use. Users of the data should attribute the original authors of that structural data. By using the materials available in the PDB archive, the user agrees to abide by the conditions described in the PDB Advisory Notice.
format:
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accessType:
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authentication:
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accessURL: http://www.rcsb.org/pdb/explore/jmol.do?structureId=3LNJ&bionumber=1
storedIn:
Protein Data Bank
license:
Data files contained in the PDB archive (ftp://ftp.wwpdb.org) are free of all copyright restrictions and made fully and freely available for both non-commercial and commercial use. Users of the data should attribute the original authors of that structural data. By using the materials available in the PDB archive, the user agrees to abide by the conditions described in the PDB Advisory Notice.
format:
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accessType:
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authentication:
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authorization:
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abbreviation:
wwPDB
homePage: http://www.wwpdb.org
ID:
SCR:006555
name:
Worldwide Protein Data Bank
abbreviation:
PDB
homePage: http://www.rcsb.org/pdb/
ID:
SCR:012820
name:
Protein Data Bank