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Title: Transcription profiling by high throughput sequencing of Arabidopsis atclb1-1 loss of function mutant      
availability:
available
aggregation:
instance of dataset
privacy:
not applicable
refinement:
curated
dateReleased:
02-26-2016
ID:
E-GEOD-48851
description:
Since AtCLB act as a negative regulator of abiotic stress response, we asked the question as to what additional factors might be contributing towards stress tolerance in Atclb1-1 loss of function mutants. One approach to find answers to this question would be to see which pathways or genes are being affected in mutant plants due to the disruption of AtCLB gene function. To achieve this, we sought a global transcriptome profiling of the mutant plant in comparison to its wild type counterpart. We analyzed the Atclb1-1 loss of function mutant and wild type Arabidopsis transcriptomes by RNA sequencing in an Illumina genome analyzer platform. From the analysis, we grouped all differentially expressed genes into various functional categories based on their biological process, molecular function and cellular component
keywords:
RNA-seq of coding RNA
format:
HTML
storedIn:
Array Express
qualifier:
not compressed
accessType:
landing page
authorization:
none
authentication:
none
primary:
true
accessURL: https://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48851
format:
JSON
storedIn:
OmicsDI
qualifier:
not compressed
accessType:
download
authorization:
none
authentication:
none
primary:
false
accessURL: www.omicsdi.org/ws/dataset/arrayexpress-repository/E-GEOD-48851.json
format:
XML
storedIn:
OmicsDI
qualifier:
not compressed
accessType:
download
authorization:
none
authentication:
none
primary:
false
accessURL: http://www.omicsdi.org/ws/dataset/arrayexpress-repository/E-GEOD-48851.xml
ID:
SCR:014747
name:
Omics Discovery Index
abbreviation:
OmicsDI
homePage: http://www.omicsdi.org/

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