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Title: Borrelia strain diversity      
dateReleased:
08-25-2016
privacy:
information not avaiable
aggregation:
instance of dataset
dateCreated:
06-28-2016
refinement:
raw
ID:
doi:10.5281/ZENODO.56573
creators:
Walter, Katharine
Chindelevitch, Leonid
availability:
available
types:
other
description:
Simulated sequence data for testing Bb strain diversity method, all in FASTQ format. Included are read sets from 3 whole genomes (B31, JD1, N40) x 10 replicates of each. B31_01_R1.fq.bz1 (Genome B31, replicate 1, read 1).  These files are  compressed with http://www.linfo.org/bzip2.html and can be decompressed with bzip2 -d file.bz2 .   Also included are reads from all 32 ospC types and subtypes (single replicate of each, uncompressed). Mixes of reads from ospC types are also included.  They are named according to the genotypes and fractions they contain: BA.01.99_ospC_1.fq is 1% ospC type B, 99% ospC type A for example, and contains the 1st read pair of the paired FASTQ reads (the paired reads are in the file BA.01.99_ospC_2.fq).
accessURL: https://doi.org/10.5281/ZENODO.56573
storedIn:
Zenodo
qualifier:
not compressed
format:
HTML
accessType:
landing page
authentication:
none
authorization:
none
abbreviation:
ZENODO
homePage: https://zenodo.org/
ID:
SCR:004129
name:
ZENODO