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Title: Publication Data From Koch Et Al 2017      
dateReleased:
01-20-2017
privacy:
information not avaiable
aggregation:
instance of dataset
dateCreated:
01-20-2017
refinement:
raw
ID:
doi:10.5281/ZENODO.253652
creators:
Koch, Stefan
Mueller, Susanne
Foddis, Marco
Bienert, Thomas
Von Elverfeldt, Dominik
Knab, Felix
Farr, Tracy Deanne
Bernard, René
Dirnagl, Ulrich
Harms, Christoph
Boehm-Sturm, Philipp
availability:
available
types:
other
description:
Contains the dataset and the MATLAB toolbox used for Koch et al. (2017) "Atlas registration for edema corrected MRI lesion volume in mouse stroke models" data_koch_et_al_jcbfm_2017.zip T2 weighted MRI data in NIFTI format from stroke mice 24 h post surgery. Contains raw data (images before registration, manually delineated hemisphere and lesion masks) and processed data (automatically generated brain mask and an additional version of raw images in registration to the Allen mouse brain atlas). Also contains a copy of some datasets for which slices in the image stack were removed. Includes an excel file describing the group assignment of each mouse (middle cerebral artery occlusion, photothrombosis or sham, full number of slices or partial number of slices) and describing files for each mouse. toolbox_koch_et_al_jcbfm_2017.zip Contains the MATLAB toolbox for registration of T2 weighted mouse MR images to the Allen brain atlas including a short manual. Important note to reviewers.pdf Please read this if you intend to download and test the toolbox before publication of the manuscript
accessURL: https://doi.org/10.5281/ZENODO.253652
storedIn:
Zenodo
qualifier:
not compressed
format:
HTML
accessType:
landing page
authentication:
none
authorization:
none
abbreviation:
ZENODO
homePage: https://zenodo.org/
ID:
SCR:004129
name:
ZENODO

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