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Title: Global Biotic Interactions: Taxon Cache And Taxon Map      
dateReleased:
01-31-2017
privacy:
information not avaiable
aggregation:
instance of dataset
dateCreated:
01-31-2017
refinement:
raw
ID:
doi:10.5281/ZENODO.265895
creators:
Poelen, Jorrit H
availability:
available
types:
other
description:
Global Biotic Interactions: Taxon Cache and Taxon Map Global Biotic Interactions (GloBI) provides access to existing species interaction datasets (Poelen et al. 2014, http://globalbioticinteractions.org). As part of the dataset integration and aggregation, a best effort is made to resolve, match and link taxonomic names and associated vernacular/common names, hierarchies and thumbnails.  The data archives included in this publication contain established taxonomic links (taxonMap.tsv.gz) and taxonomic information (taxonCache.tsv.gz) that GloBI retrieved and integrated from taxonomic name sources and web services associated with http://itis.gov, http://globalnames.org, http://eol.org and others open data services.  While GloBI is not a naming authority and the primary goal of the name matching process is to detect incorrect or outdates names, the archives may serve as an example of how to publish denormalized taxonomic records and their interrelatioships in a pragmatic way. For related discussion threads, see https://github.com/jhpoelen/eol-globi-data/issues/145 , https://github.com/jhpoelen/eol-globi-data/issues/274 , https://github.com/jhpoelen/eol-globi-data/issues/70 , https://github.com/EOL/tramea/issues/10 and https://github.com/jhpoelen/eol-globi-data/issues/274 . Files      README        this file      taxonCache.tsv.gz        Taxonomic name, ids, hierarchies, common names and thumbnail associated to taxa known to GloBI. Accessed at https://s3.amazonaws.com/globi/snapshot/target/data/taxa/taxonCache.tsv.gz on 31 January 2017.     taxonCacheFirst10.tsv       Header and 10 following lines from taxonCache.tsv.gz.     taxonMap.tsv.gz        Links between taxon name and ids across various taxon providers. Accessed at https://s3.amazonaws.com/globi/snapshot/target/data/taxa/taxonMap.tsv.gz on 31 January 2017.    taxonMapFirst10.tsv       Header and 10 following lines from taxonMap.tsv.gz.     prefixes.tsv       Term prefixes and their associated uri schemes.  Column Descriptions   taxonCache.tsv.gz      1 | id     2 | name     3 | rank     4 | commonNames     5 | path     6 | pathIds      7 | pathNames     8 | externalUrl     9 | thumbnailUrl     taxonMap.tsv.gz     1 | providedTaxonId     2 | providedTaxonName     3 | resolvedTaxonId     4 | resolvedTaxonName References Jorrit H. Poelen, James D. Simons and Chris J. Mungall. (2014). Global Biotic Interactions: An open infrastructure to share and analyze species-interaction datasets. Ecological Informatics. http://dx.doi.org/10.1016/j.ecoinf.2014.08.005.
accessURL: https://doi.org/10.5281/ZENODO.265895
storedIn:
Zenodo
qualifier:
not compressed
format:
HTML
accessType:
landing page
authentication:
none
authorization:
none
abbreviation:
ZENODO
homePage: https://zenodo.org/
ID:
SCR:004129
name:
ZENODO

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