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Title: Cpbi_Seqdb_Demo Sample Qfo Sequence Library      
dateReleased:
03-16-2017
privacy:
information not avaiable
aggregation:
instance of dataset
dateCreated:
03-16-2017
refinement:
raw
ID:
doi:10.5281/ZENODO.377027
creators:
Pearson, William R.
availability:
available
types:
other
description:
A medium-sized (approx 1 million entry) protein sequence database constructed from the NCBI 'nr' (Jan, 2017) database selecting Uniprot (SwissProt), RefSeq, and PDB entries for 66 species (taxon_id's) from the Quest for Orthologs organism set.  These files are designed to be used in conjunction with scripts and SQL files to construct the seqdb_demo database, as described in a Current Protocols in Bioinformatics Unit 3.9 revised Spring, 2017.  The files are: qfo_demo.gz  -  a fasta-format sequence library with the curren NR Defline format (gzip compressed) qfo_prot.accession2taxonid.gz, qfo_pdb.accession2taxid.gz- tables that map accessions to taxon_id's and gi-numbers, similar to that available in the NCBI pub/taxonomy/accession2taxid/prot.accession2taxid and pdb.accession2taxid files (gzip compressed).
accessURL: https://doi.org/10.5281/ZENODO.377027
storedIn:
Zenodo
qualifier:
not compressed
format:
HTML
accessType:
landing page
authentication:
none
authorization:
none
abbreviation:
ZENODO
homePage: https://zenodo.org/
ID:
SCR:004129
name:
ZENODO

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