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Title: DNA methylation patterns of lupus patient PBMCs, subdivided based on protein expression of ARID3a      
keywords:
Epigenomics
ID:
PRJNA335755
description:
Methyl-seq data was obtained from total peripheral blood mononuclear cells of two patients with systemic lupus erythematosus who were characterized as having>2 standard deviations more ARID3a-expressing B lymphocytes than healthy controls. Similarly, methyl-seq data was also obtained from two SLE patient samples with normal (low) numbers of ARID3-expressing B lymphocytes. Our previous studies showed that increased ARID3a expression in B lymphocytes was associated increased disease activity. Data were generated on an Illumina Hiseq 2000 with paired-end 100bp reads and quality control metrics were assessed with Picard tools. Overall design: Methylation profiles of genomic DNA from four SLE patient PBMC samples, two with high numbers of ARID3a expressing B cells (ARID3aH) versus two with normal numbers of ARID3a+ B cells (ARID3aN), were generated on an Illumina Hiseq 2000 with paired-end 100bp reads.
accesstypes:
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landingpage: http://www.ncbi.nlm.nih.gov/bioproject/PRJNA335755
authentication:
none
authorization:
none
ID:
pmid:27656675
name:
Homo sapiens
ncbiID:
ncbitax:9606
abbreviation:
NCBI
homePage: http://www.ncbi.nlm.nih.gov
ID:
SCR:006472
name:
National Center for Biotechnology Information
homePage: http://www.ncbi.nlm.nih.gov/bioproject
ID:
SCR:004801
name:
NCBI BioProject
  • R01 AI044215/AI/NIAID NIH HHS/United States

  • U54 GM104938/GM/NIGMS NIH HHS/United States

  • U19 AI082714/AI/NIAID NIH HHS/United States

  • P30 GM103510/GM/NIGMS NIH HHS/United States

  • P30 AR053483/AR/NIAMS NIH HHS/United States

  • R01 AR056360/AR/NIAMS NIH HHS/United States

  • P30 GM110766/GM/NIGMS NIH HHS/United States

  • R56 AI118836/AI/NIAID NIH HHS/United States

  • U01 AI101934/AI/NIAID NIH HHS/United States

  • R01 AR063124/AR/NIAMS NIH HHS/United States

  • T32 AI007633/AI/NIAID NIH HHS/United States

  • R21 AI090343/AI/NIAID NIH HHS/United States

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