Mountain View
biomedical and healthCAre Data Discovery Index Ecosystem
help Advanced Search
Title: Rat liver. Control vs. Chemical treated, 3 days      
dateReleased:
06-22-2009
description:
The final goal of this study is to develop a short term and highly accurate prediction method of carcinogenicity based on gene expression profile of rats administrated by carcinogens. We conducted 3 days-, 14 days- and 28 days-repeated dose experiments in male F344 rats with 47 carcinogens and 26 non-carcinogens, and the gene expression profiles in liver were investigated by custom glass microarrays. Supplementary file "73 Compounds for training" indicates 47 carcinogens and 26 non-carcinogens. Supplementary file "15 Compounds for test" lists the other compounds which are for test. Two-condition experiment, control vs. chemical treated rat liver. Biological replicates: 4 control, 4 treated, control samples were pooled. One replicate per array.
privacy:
not applicable
aggregation:
instance of dataset
ID:
E-GEOD-16340
refinement:
raw
alternateIdentifiers:
16340
dateSubmitted:
05-28-2009
keywords:
functional genomics
dateModified:
05-01-2014
availability:
available
types:
gene expression
name:
Rattus norvegicus
ID:
A-GEOD-8576
name:
CERI Rat 6.7K ToxArrayIII
accessURL: https://www.ebi.ac.uk/arrayexpress/files/E-GEOD-16340/E-GEOD-16340.raw.1.zip
storedIn:
ArrayExpress
qualifier:
gzip compressed
format:
TXT
accessType:
download
authentication:
none
authorization:
none
accessURL: https://www.ebi.ac.uk/arrayexpress/files/E-GEOD-16340/E-GEOD-16340.processed.1.zip
storedIn:
ArrayExpress
qualifier:
gzip compressed
format:
TXT
accessType:
download
authentication:
none
authorization:
none
accessURL: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE16340
storedIn:
Gene Expression Omnibus
qualifier:
not compressed
format:
HTML
accessType:
landing page
primary:
true
authentication:
none
authorization:
none
abbreviation:
EBI
homePage: http://www.ebi.ac.uk/
ID:
SCR:004727
name:
European Bioinformatics Institute
homePage: https://www.ebi.ac.uk/arrayexpress/
ID:
SCR:002964
name:
ArrayExpress