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Title: Spatial transcriptomic analysis of the Arabidopsis thaliana - Botrytis cinerea interaction      
dateReleased:
03-01-2011
description:
A 10 ul drop of B. cinerea spores prepared in half-strength commercial grape juice was placed in the middle of detached Arabidopsis leaves. A cock-borer of 6 mm diameter was used to harvest leaf discs starting from the edge of the lesion (close, 0-6 mm) and the edge of the first disc (away, 6-12 mm) 48 hr after inoculation. Control plants were inoculated with a 10 ul drop of half-strength commercial grape juice with no spores. Three Biological replicates were done of which the third replicate was a dye-swap. In total 12 samples were analyzed. Each array constituted one replicate making six arrays for the whole experiment.
privacy:
not applicable
aggregation:
instance of dataset
ID:
E-GEOD-24444
refinement:
raw
alternateIdentifiers:
24444
keywords:
functional genomics
dateModified:
05-02-2014
availability:
available
types:
gene expression
name:
Arabidopsis thaliana
ID:
A-GEOD-2508
name:
Galbraith Laboratory Operon Long Oligonucleotide Microarray version 3.0 (ATv302.02.Z)
accessURL: https://www.ebi.ac.uk/arrayexpress/files/E-GEOD-24444/E-GEOD-24444.raw.1.zip
storedIn:
ArrayExpress
qualifier:
gzip compressed
format:
TXT
accessType:
download
authentication:
none
authorization:
none
accessURL: https://www.ebi.ac.uk/arrayexpress/files/E-GEOD-24444/E-GEOD-24444.processed.1.zip
storedIn:
ArrayExpress
qualifier:
gzip compressed
format:
TXT
accessType:
download
authentication:
none
authorization:
none
accessURL: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE24444
storedIn:
Gene Expression Omnibus
qualifier:
not compressed
format:
HTML
accessType:
landing page
primary:
true
authentication:
none
authorization:
none
abbreviation:
EBI
homePage: http://www.ebi.ac.uk/
ID:
SCR:004727
name:
European Bioinformatics Institute
homePage: https://www.ebi.ac.uk/arrayexpress/
ID:
SCR:002964
name:
ArrayExpress
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