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Title: Characterization of the the L. plantarum capsular polysaccharide clusters      
dateReleased:
12-23-2011
description:
The bacterial cell envelope is a complex, multilayered structure that is not only essential to maintain cellular integrity, but also facilitates vital bacterial processes such as adaption, colonization and adhesion. Cell envelopes comprise a wide range of molecules, such as proteins and capsular polysaccharide (CPS), which collectively decorate the bacterial cell in a species- and strain specific manner. Here we characterized the 4 CPS gene cluster of L. plantarum and assessed the impact on CPS (combinatorial) gene deletions on surface polysaccharide composition. individual KOs of the cps clusters and the combination of all four together were compared with the WT expression in a loop design. The KO of 1-3 was directly compared to the WT (dye swapped)
privacy:
not applicable
aggregation:
instance of dataset
ID:
E-GEOD-34690
refinement:
raw
alternateIdentifiers:
34690
keywords:
functional genomics
dateModified:
05-04-2014
availability:
available
types:
gene expression
name:
Lactobacillus plantarum
ID:
A-GEOD-13984
name:
Lactobacillus plantarum WCFS1 15K 60-mer array, Version 3.1, our ID LPAG3.1_8
accessURL: https://www.ebi.ac.uk/arrayexpress/files/E-GEOD-34690/E-GEOD-34690.raw.1.zip
storedIn:
ArrayExpress
qualifier:
gzip compressed
format:
TXT
accessType:
download
authentication:
none
authorization:
none
accessURL: https://www.ebi.ac.uk/arrayexpress/files/E-GEOD-34690/E-GEOD-34690.processed.1.zip
storedIn:
ArrayExpress
qualifier:
gzip compressed
format:
TXT
accessType:
download
authentication:
none
authorization:
none
accessURL: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE34690
storedIn:
Gene Expression Omnibus
qualifier:
not compressed
format:
HTML
accessType:
landing page
primary:
true
authentication:
none
authorization:
none
abbreviation:
EBI
homePage: http://www.ebi.ac.uk/
ID:
SCR:004727
name:
European Bioinformatics Institute
homePage: https://www.ebi.ac.uk/arrayexpress/
ID:
SCR:002964
name:
ArrayExpress
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