Mountain View
biomedical and healthCAre Data Discovery Index Ecosystem
help Advanced Search
Title: transcriptome analyses of n8514 and wox14-Floral stem gene expression affected by the AtWOX14 gene mutation      
dateReleased:
12-24-2011
description:
au11-01_wox14bis - transcriptome analyses of n8514 and wox14 - Our scope is to establish a functional link to organ initiation and development in Arabidopsis by identifying genes that are deregulated in the wox14 mutant background. - The WOX13 OG contained the most conserved plant WOX proteins including the only WOX detected in the highly proliferating basal unicellular and photosynthetic organism Ostreococcus tauri. In Arabidopsis thaliana, an intriguing clade, represented by the functional AtWOX14 gene inside the WOX13 OG, was only found in the Brassicaceae. Compared to AtWOX13, the gene expression profile of AtWOX14 was transient during lateral root formation, anthers and stem development . A mutational insertion upstream of the AtWOX14 homeodomain sequence led to abnormal root development, a delay in the floral transition and premature anther differentiation. Transcriptome analyses of the N8514 transposon donor line and the issued wox14 floral stem basis grown on soil for 8 weeks (growth stage 6) in LD condition is done to identify genes that are deregulated in the wox14 mutant background. 2 dye-swap - gene knock out,normal vs transgenic comparaison
privacy:
not applicable
aggregation:
instance of dataset
ID:
E-GEOD-31137
refinement:
raw
alternateIdentifiers:
31137
keywords:
functional genomics
dateModified:
05-02-2014
availability:
available
types:
gene expression
name:
Arabidopsis thaliana
ID:
A-GEOD-9553
name:
URGV Arabidopsis thaliana 34.6K CATMA_v5
accessURL: https://www.ebi.ac.uk/arrayexpress/files/E-GEOD-31137/E-GEOD-31137.raw.1.zip
storedIn:
ArrayExpress
qualifier:
gzip compressed
format:
TXT
accessType:
download
authentication:
none
authorization:
none
accessURL: https://www.ebi.ac.uk/arrayexpress/files/E-GEOD-31137/E-GEOD-31137.processed.1.zip
storedIn:
ArrayExpress
qualifier:
gzip compressed
format:
TXT
accessType:
download
authentication:
none
authorization:
none
accessURL: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE31137
storedIn:
Gene Expression Omnibus
qualifier:
not compressed
format:
HTML
accessType:
landing page
primary:
true
authentication:
none
authorization:
none
abbreviation:
EBI
homePage: http://www.ebi.ac.uk/
ID:
SCR:004727
name:
European Bioinformatics Institute
homePage: https://www.ebi.ac.uk/arrayexpress/
ID:
SCR:002964
name:
ArrayExpress

Feedback?

If you are having problems using our tools, or if you would just like to send us some feedback, please post your questions on GitHub.