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Title: Genome-wide QTL analysis in combination with a genetical-genomics approach reveals new candidate genes for the control of tuber carotenoid content in potato      
dateReleased:
12-26-2011
description:
The aim of this study was to conduct a genome-wide analysis for constituent tuber carotenoid QTL. Using a genetical genomics approach samples from clones with similar carotenoid traits were bulked and patterns of gene expression were measured for each bulk by microarray analysis. Variation of gene expression within these bulks may be due to either polymorphisms located near to or within the gene (cis-eQTL) or indirectly from a distant location on the genome (trans-eQTL). Differentially expressed clones from bulks with contrasting carotenoid traits were genetically mapped in order to re-enforce the QTL analysis, and provide a rapid means of developing gene markers closely associated with the target traits.
privacy:
not applicable
aggregation:
instance of dataset
ID:
E-TABM-1200
refinement:
raw
keywords:
functional genomics
dateModified:
05-02-2014
creators:
Pete Hedley
availability:
available
types:
gene expression
name:
Solanum tuberosum
name:
Dye swap
ID:
A-MEXP-1117
name:
POCI S tuberosum 44K v2
accessURL: https://www.ebi.ac.uk/arrayexpress/files/E-TABM-1200/E-TABM-1200.raw.1.zip
storedIn:
ArrayExpress
qualifier:
gzip compressed
format:
TXT
accessType:
download
authentication:
none
authorization:
none
accessURL: https://www.ebi.ac.uk/arrayexpress/files/E-TABM-1200/E-TABM-1200.processed.1.zip
storedIn:
ArrayExpress
qualifier:
gzip compressed
format:
TXT
accessType:
download
authentication:
none
authorization:
none
abbreviation:
EBI
homePage: http://www.ebi.ac.uk/
ID:
SCR:004727
name:
European Bioinformatics Institute
homePage: https://www.ebi.ac.uk/arrayexpress/
ID:
SCR:002964
name:
ArrayExpress
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