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Title: Metabolic switching in Streptomyces coelicolor wild type, time series under glutamate depletion condition      
dateReleased:
12-31-2011
description:
During the lifetime of a fermenter culture, the soil bacterium S. coelicolor undergoes a major metabolic switch from exponential growth to antibiotic production. We have studied gene expression patterns during this switch, using a specifically designed Affymetrix GeneChip and a high-resolution time-series of fermenter-grown samples. This time series was conducted using medium leading to glutamate depletion and the cultivation conditions as published in Nieselt et al. BMC Genomics 2010, performed with the Streptomyces coelicolor wild type strain M145E. 30 samples, no replicates; one hour resolution from 20-32h and 40-42h; half our resolution from 32-40 h; two hour resolution 44-58h; sample missing for 29 and 34 h
privacy:
not applicable
aggregation:
instance of dataset
ID:
E-GEOD-30569
refinement:
raw
alternateIdentifiers:
30569
keywords:
functional genomics
dateModified:
06-25-2012
availability:
available
types:
gene expression
name:
Streptomyces coelicolor
ID:
A-GEOD-9417
name:
Streptomyces coelicolor Affymetrix array
accessURL: https://www.ebi.ac.uk/arrayexpress/files/E-GEOD-30569/E-GEOD-30569.raw.1.zip
storedIn:
ArrayExpress
qualifier:
gzip compressed
format:
TXT
accessType:
download
authentication:
none
authorization:
none
accessURL: https://www.ebi.ac.uk/arrayexpress/files/E-GEOD-30569/E-GEOD-30569.processed.1.zip
storedIn:
ArrayExpress
qualifier:
gzip compressed
format:
TXT
accessType:
download
authentication:
none
authorization:
none
accessURL: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE30569
storedIn:
Gene Expression Omnibus
qualifier:
not compressed
format:
HTML
accessType:
landing page
primary:
true
authentication:
none
authorization:
none
abbreviation:
EBI
homePage: http://www.ebi.ac.uk/
ID:
SCR:004727
name:
European Bioinformatics Institute
homePage: https://www.ebi.ac.uk/arrayexpress/
ID:
SCR:002964
name:
ArrayExpress
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