biomedical and healthCAre Data Discovery Index Ecosystem
biomedical and healthCAre Data Discovery Index Ecosystem
| Title: | Strome HK00001_H3K36ME3_13C9_N2_L2_s4
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| dateReleased: |
04-22-2012
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| description: |
modENCODE_submission_3556 This submission comes from a modENCODE project of Jason Lieb. For full list of modENCODE projects, see Project Goal: The focus of our analysis will be elements that specify nucleosome positioning and occupancy, control domains of gene expression, induce repression of the X chromosome, guide mitotic segregation and genome duplication, govern homolog pairing and recombination during meiosis, and organize chromosome positioning within the nucleus. 126 strategically selected targets include key histone modifications, histone variants, RNA polymerase II isoforms, dosage-compensation proteins, centromere components, homolog-pairing facilitators, recombination markers, and nuclear-envelope constituents. We will integrate information generated with existing knowledge on the biology of the targets, perform ChIP-chip analysis on mutant and RNAi extracts lacking selected target proteins, use extrachromosomal arrays to assess the ability of candidate identified sequence motifs to recruit targets in vivo, identify tissue-specific patterns of selected targets, and create integrated, quantitative models of transcription and whole-chromosome functions. For data usage terms and conditions, please refer to and EXPERIMENT TYPE: CHIP-chip. BIOLOGICAL SOURCE: Strain: N2; Developmental Stage: L2 Larva; Genotype: wild type; Sex: mixed Male and Hermaphrodite population; NUMBER OF REPLICATES: 1; EXPERIMENTAL FACTORS: Developmental Stage L2 Larva; temp (temperature) 20 degree celsius; Antibody HK00001 H3K36me3:13C9 (target is H3K36me3); Strain N2
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| privacy: |
not applicable
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| aggregation: |
instance of dataset
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| ID: |
E-GEOD-37509
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| refinement: |
raw
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| alternateIdentifiers: |
37509
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| keywords: |
functional genomics
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| dateModified: |
05-03-2014
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| availability: |
available
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| types: |
gene expression
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| name: |
Caenorhabditis elegans
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| ID: |
A-GEOD-8647
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| name: |
080922_modEncode_Caenorhabditis elegans_2M tiling chip_HX1
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| accessURL: | https://www.ebi.ac.uk/arrayexpress/files/E-GEOD-37509/E-GEOD-37509.raw.1.zip |
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ArrayExpress
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gzip compressed
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TXT
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| accessType: |
download
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| authentication: |
none
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| authorization: |
none
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| accessURL: | https://www.ebi.ac.uk/arrayexpress/files/E-GEOD-37509/E-GEOD-37509.processed.1.zip |
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ArrayExpress
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gzip compressed
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| accessType: |
download
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| authentication: |
none
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| authorization: |
none
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| accessURL: | https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE37509 |
| storedIn: |
Gene Expression Omnibus
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| qualifier: |
not compressed
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| format: |
HTML
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| accessType: |
landing page
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| primary: |
true
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| authentication: |
none
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| authorization: |
none
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| abbreviation: |
EBI
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| homePage: | http://www.ebi.ac.uk/ |
| ID: |
SCR:004727
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| name: |
European Bioinformatics Institute
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| homePage: | https://www.ebi.ac.uk/arrayexpress/ |
| ID: |
SCR:002964
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| name: |
ArrayExpress
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