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Title: Strome HK00001_H3K36ME3_13C9_N2_L2_s4      
dateReleased:
04-22-2012
description:
modENCODE_submission_3556 This submission comes from a modENCODE project of Jason Lieb. For full list of modENCODE projects, see Project Goal: The focus of our analysis will be elements that specify nucleosome positioning and occupancy, control domains of gene expression, induce repression of the X chromosome, guide mitotic segregation and genome duplication, govern homolog pairing and recombination during meiosis, and organize chromosome positioning within the nucleus. 126 strategically selected targets include key histone modifications, histone variants, RNA polymerase II isoforms, dosage-compensation proteins, centromere components, homolog-pairing facilitators, recombination markers, and nuclear-envelope constituents. We will integrate information generated with existing knowledge on the biology of the targets, perform ChIP-chip analysis on mutant and RNAi extracts lacking selected target proteins, use extrachromosomal arrays to assess the ability of candidate identified sequence motifs to recruit targets in vivo, identify tissue-specific patterns of selected targets, and create integrated, quantitative models of transcription and whole-chromosome functions. For data usage terms and conditions, please refer to and EXPERIMENT TYPE: CHIP-chip. BIOLOGICAL SOURCE: Strain: N2; Developmental Stage: L2 Larva; Genotype: wild type; Sex: mixed Male and Hermaphrodite population; NUMBER OF REPLICATES: 1; EXPERIMENTAL FACTORS: Developmental Stage L2 Larva; temp (temperature) 20 degree celsius; Antibody HK00001 H3K36me3:13C9 (target is H3K36me3); Strain N2
privacy:
not applicable
aggregation:
instance of dataset
ID:
E-GEOD-37509
refinement:
raw
alternateIdentifiers:
37509
keywords:
functional genomics
dateModified:
05-03-2014
availability:
available
types:
gene expression
name:
Caenorhabditis elegans
ID:
A-GEOD-8647
name:
080922_modEncode_Caenorhabditis elegans_2M tiling chip_HX1
accessURL: https://www.ebi.ac.uk/arrayexpress/files/E-GEOD-37509/E-GEOD-37509.raw.1.zip
storedIn:
ArrayExpress
qualifier:
gzip compressed
format:
TXT
accessType:
download
authentication:
none
authorization:
none
accessURL: https://www.ebi.ac.uk/arrayexpress/files/E-GEOD-37509/E-GEOD-37509.processed.1.zip
storedIn:
ArrayExpress
qualifier:
gzip compressed
format:
TXT
accessType:
download
authentication:
none
authorization:
none
accessURL: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE37509
storedIn:
Gene Expression Omnibus
qualifier:
not compressed
format:
HTML
accessType:
landing page
primary:
true
authentication:
none
authorization:
none
abbreviation:
EBI
homePage: http://www.ebi.ac.uk/
ID:
SCR:004727
name:
European Bioinformatics Institute
homePage: https://www.ebi.ac.uk/arrayexpress/
ID:
SCR:002964
name:
ArrayExpress