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Title: H. salinarum transcriptome dynamics in response to 0.85mM extracellular copper      
dateReleased:
06-29-2012
description:
Halobacterium salinarum is a halophillic archea that is capable of sustaining growth despite dramatic changes to the concentration of ions in its extracellular environment. Here we studied H. salinarum's specific adaptation response to the transition metal copper. Analysis utilized pre-treatment (time < 0min) samples as controls for all subsequent timepoints. Time course samples were taken at +0, 5, 10, 20, 40, 80, 160, and 320min post treatment. Interarray comparisons were normalized relative to a reference RNA sample generated from unperturbed H. salinarum batch culture in rich medium at OD600 0.6-0.8.
privacy:
not applicable
aggregation:
instance of dataset
ID:
E-GEOD-39028
refinement:
raw
alternateIdentifiers:
39028
keywords:
functional genomics
dateModified:
05-03-2014
availability:
available
types:
gene expression
name:
Halobacterium sp. NRC-1
ID:
A-GEOD-13682
name:
ISB Halobacterium Spotted Microarray [gene-centered version]
accessURL: https://www.ebi.ac.uk/arrayexpress/files/E-GEOD-39028/E-GEOD-39028.raw.1.zip
storedIn:
ArrayExpress
qualifier:
gzip compressed
format:
TXT
accessType:
download
authentication:
none
authorization:
none
accessURL: https://www.ebi.ac.uk/arrayexpress/files/E-GEOD-39028/E-GEOD-39028.processed.1.zip
storedIn:
ArrayExpress
qualifier:
gzip compressed
format:
TXT
accessType:
download
authentication:
none
authorization:
none
accessURL: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE39028
storedIn:
Gene Expression Omnibus
qualifier:
not compressed
format:
HTML
accessType:
landing page
primary:
true
authentication:
none
authorization:
none
abbreviation:
EBI
homePage: http://www.ebi.ac.uk/
ID:
SCR:004727
name:
European Bioinformatics Institute
homePage: https://www.ebi.ac.uk/arrayexpress/
ID:
SCR:002964
name:
ArrayExpress

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