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Title: Transciptome analysis of Salmonella enterica serovar Typhimurium UK1 delta-rsiM at oxidative stress      
dateReleased:
06-30-2012
description:
Salmonella has various mechanisms of small RNA-mediated gene regulation. In Salmonella enterica serovar Typhimurium, a novel intergenic transcript RsiM is involved in oxidative stress response which functions as one of the powerful antimicrobials in macrophage innate immunity. We note that the ∆rsiM mutant is sensitive to hydrogen peroxide (5.0mM). This finding provides insights into the function of RsiM as a regulator of oxidative stress response. UK1 wild-type and ∆rsiM strains were grown in LB medium at 37℃ to an OD600 of 0.6, and then subjected to oxidative stress (5.0 mM hydroperoxide) for 30 min. Total RNA was extracted from three biological replicates of wild-type and ∆rsiM mutant.
privacy:
not applicable
aggregation:
instance of dataset
ID:
E-GEOD-37626
refinement:
raw
alternateIdentifiers:
37626
keywords:
functional genomics
dateModified:
05-03-2014
availability:
available
types:
gene expression
name:
Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1
ID:
A-GEOD-15054
name:
Nimblegen Salmonella Typhimurium LT2 4.5K [081014_Styp_LT2_EXP]
accessURL: https://www.ebi.ac.uk/arrayexpress/files/E-GEOD-37626/E-GEOD-37626.raw.1.zip
storedIn:
ArrayExpress
qualifier:
gzip compressed
format:
TXT
accessType:
download
authentication:
none
authorization:
none
accessURL: https://www.ebi.ac.uk/arrayexpress/files/E-GEOD-37626/E-GEOD-37626.processed.1.zip
storedIn:
ArrayExpress
qualifier:
gzip compressed
format:
TXT
accessType:
download
authentication:
none
authorization:
none
accessURL: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE37626
storedIn:
Gene Expression Omnibus
qualifier:
not compressed
format:
HTML
accessType:
landing page
primary:
true
authentication:
none
authorization:
none
abbreviation:
EBI
homePage: http://www.ebi.ac.uk/
ID:
SCR:004727
name:
European Bioinformatics Institute
homePage: https://www.ebi.ac.uk/arrayexpress/
ID:
SCR:002964
name:
ArrayExpress

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