biomedical and healthCAre Data Discovery Index Ecosystem
biomedical and healthCAre Data Discovery Index Ecosystem
| Title: | RNA-seq of zebrafish embryos with morphologically mutant phenotypes, Zebrafish Mutation Project
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| dateReleased: |
07-02-2012
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| description: |
The transcriptome of zebrafish with morphologically mutant phenotypes associated with knockout alleles were analyised using Illumina sequencing to detect differential transcript abundance. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website Total RNA was extracted from morpholically abnormal and sibling wild type embryos from 3 clutches using Trizol. After DNase treatment non-directional RNAseq libraries were made using the TrueSeq protocol with sample indexing. Libraries were 75 base paired-end sequenced by Illumina HiSeq. This data is part of a pre-publication release. For information on the proper use of pre-publication data shared by the Wellcome Trust Sanger Institute (including details of any publication moratoria), please see
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| privacy: |
not applicable
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| aggregation: |
instance of dataset
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| ID: |
E-ERAD-121
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| refinement: |
raw
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| keywords: |
functional genomics
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| dateModified: |
05-17-2016
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| creators: |
The Wellcome Trust Sanger Institute
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| availability: |
available
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| types: |
gene expression
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| name: |
Danio rerio
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| accessURL: | https://www.ebi.ac.uk/arrayexpress/files/E-ERAD-121/E-ERAD-121.raw.1.zip |
| storedIn: |
ArrayExpress
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| qualifier: |
gzip compressed
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| format: |
TXT
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| accessType: |
download
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| authentication: |
none
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| authorization: |
none
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| accessURL: | https://www.ebi.ac.uk/arrayexpress/files/E-ERAD-121/E-ERAD-121.processed.1.zip |
| storedIn: |
ArrayExpress
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| qualifier: |
gzip compressed
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| format: |
TXT
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| accessType: |
download
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| authentication: |
none
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| authorization: |
none
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| abbreviation: |
EBI
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| homePage: | http://www.ebi.ac.uk/ |
| ID: |
SCR:004727
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| name: |
European Bioinformatics Institute
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| homePage: | https://www.ebi.ac.uk/arrayexpress/ |
| ID: |
SCR:002964
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| name: |
ArrayExpress
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