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Title: Noise in rpoS expression determines cellular permissiveness for horizontal transfer of an Integrative and Conjugative Element      
dateReleased:
09-01-2012
description:
To support our molecular hypothesis of the effect of rpoS and inrR genes over the activation of the ICEclc genome in Pseudomonas knackmussii B13, we have employed Agilent DNA custom microarray in the 8X15K format. ICEclc-specific gene expression in Pseudomonas knackmussii strain B13 was measured after 48 hours of stationary phase following a growth on 10mM 3-chlorobenzoate (3CBA) as sole carbon and energy source. Various genotypes were tested: wild type (strain n°78, in 5 replicates), inrR-/- (strain 2201, in triplicates), delta::rpoS (strain 2671, in triplicates).
privacy:
not applicable
aggregation:
instance of dataset
ID:
E-GEOD-35501
refinement:
raw
alternateIdentifiers:
35501
keywords:
functional genomics
dateModified:
09-26-2012
availability:
available
types:
gene expression
name:
Pseudomonas knackmussii
ID:
A-GEOD-10091
name:
Agilent-020923 ICEclcB13
accessURL: https://www.ebi.ac.uk/arrayexpress/files/E-GEOD-35501/E-GEOD-35501.raw.1.zip
storedIn:
ArrayExpress
qualifier:
gzip compressed
format:
TXT
accessType:
download
authentication:
none
authorization:
none
accessURL: https://www.ebi.ac.uk/arrayexpress/files/E-GEOD-35501/E-GEOD-35501.processed.1.zip
storedIn:
ArrayExpress
qualifier:
gzip compressed
format:
TXT
accessType:
download
authentication:
none
authorization:
none
accessURL: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE35501
storedIn:
Gene Expression Omnibus
qualifier:
not compressed
format:
HTML
accessType:
landing page
primary:
true
authentication:
none
authorization:
none
abbreviation:
EBI
homePage: http://www.ebi.ac.uk/
ID:
SCR:004727
name:
European Bioinformatics Institute
homePage: https://www.ebi.ac.uk/arrayexpress/
ID:
SCR:002964
name:
ArrayExpress
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