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Title: Transcription profiling by high throughput sequencing of two rice genotypes after inoculation with Burkholderia glumae      
dateReleased:
09-18-2012
description:
Bacterial panicle blight caused by the bacterium Burkholderia glumae is an emerging disease of rice in the United States. Not much is known about this disease, the disease cycle or any source of disease resistance. To understand the interaction between rice and Burkholderia glumae, we used transcriptomics via next-generation sequencing (RNA-Seq) and bioinformatics to identify differentially expressed transcripts between resistant and susceptible interactions and formulate a model for rice resistance to the disease. There was a total of 36 tissue samples that included 2 rice genotypes (CL 151 and CL 161) × 2 treatment groups (water control and bacterium inoculated) × 3 time points × 3 biological replicates. Note: Samples in SRA were assigned the same sample accession. This is incorrect as there are different samples, hence “Source Name” was replaced with new values. Comment[ENA_SAMPLE] contains the original SRA sample accessions.
privacy:
not applicable
aggregation:
instance of dataset
ID:
E-MTAB-4406
refinement:
raw
keywords:
functional genomics
dateModified:
03-17-2016
creators:
Zenaida Magbanua
availability:
available
types:
gene expression
name:
Oryza sativa
accessURL: https://www.ebi.ac.uk/arrayexpress/files/E-MTAB-4406/E-MTAB-4406.raw.1.zip
storedIn:
ArrayExpress
qualifier:
gzip compressed
format:
TXT
accessType:
download
authentication:
none
authorization:
none
accessURL: https://www.ebi.ac.uk/arrayexpress/files/E-MTAB-4406/E-MTAB-4406.processed.1.zip
storedIn:
ArrayExpress
qualifier:
gzip compressed
format:
TXT
accessType:
download
authentication:
none
authorization:
none
abbreviation:
EBI
homePage: http://www.ebi.ac.uk/
ID:
SCR:004727
name:
European Bioinformatics Institute
homePage: https://www.ebi.ac.uk/arrayexpress/
ID:
SCR:002964
name:
ArrayExpress

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