Title: | Genome-wide analysis of Human Upf1, SMG5, SMG7 and PNRC2 downregulated substrates in HeLa cell
![]() |
dateReleased: |
11-01-2012
|
description: |
Analysis of cellular NMD (Nonsense-mediated mRNA decay) substrates that regulated by Upf1, SMG5, SMG7 and/or PNRC2 in HeLa cell. The hypothesis tested in the present study was that endogenous NMD substrates may co-regulated by Upf1, SMG5, SMG7 and PNRC2. Total RNA obtained from HeLa cells with downregulation of Upf1, SMG5, PNRC2 or SMG7 by siRNA. The up- or down-regulated transcripts were compare to control siRNA treated HeLa cell RNA extract. Significant transcripts were confirmed by replication
|
privacy: |
not applicable
|
aggregation: |
instance of dataset
|
ID: |
E-GEOD-34876
|
refinement: |
raw
|
alternateIdentifiers: |
34876
|
keywords: |
functional genomics
|
dateModified: |
11-08-2012
|
availability: |
available
|
types: |
gene expression
|
name: |
Homo sapiens
|
ID: |
A-GEOD-10558
|
name: |
Illumina HumanHT-12 V4.0 expression beadchip
|
accessURL: | https://www.ebi.ac.uk/arrayexpress/files/E-GEOD-34876/E-GEOD-34876.raw.1.zip![]() |
storedIn: |
ArrayExpress
|
qualifier: |
gzip compressed
|
format: |
TXT
|
accessType: |
download
|
authentication: |
none
|
authorization: |
none
|
accessURL: | https://www.ebi.ac.uk/arrayexpress/files/E-GEOD-34876/E-GEOD-34876.processed.1.zip |
storedIn: |
ArrayExpress
|
qualifier: |
gzip compressed
|
format: |
TXT
|
accessType: |
download
|
authentication: |
none
|
authorization: |
none
|
accessURL: | https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE34876 |
storedIn: |
Gene Expression Omnibus
|
qualifier: |
not compressed
|
format: |
HTML
|
accessType: |
landing page
|
primary: |
true
|
authentication: |
none
|
authorization: |
none
|
abbreviation: |
EBI
|
homePage: | http://www.ebi.ac.uk/ |
ID: |
SCR:004727
|
name: |
European Bioinformatics Institute
|
homePage: | https://www.ebi.ac.uk/arrayexpress/ |
ID: |
SCR:002964
|
name: |
ArrayExpress
|