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Title: Expression data from E. faecalis Fsr mutants during GBAP induction      
dateReleased:
05-01-2013
description:
To rigorously characterize the Fsr regulon, we compared gene expression in V583 isogenic mutants in Fsr genes and each of the Fsr-regulated protease genes using microarrays and purified GBAP, the quorum-sensing molecule. We used microarrays to identified the genes that are regulated directly by Fsr Quorum sensing system. E. faecalis V583 cells were collected at 0 minutes and 10 minutes after GBAP addition, for RNA extraction and hybridization on Affymetrix microarrays. The cells were collected when the number of the cells are ideal for Quorum sensing activation. This procedure was also made without GBAP addition. For each condition were made replicates.
privacy:
not applicable
aggregation:
instance of dataset
ID:
E-GEOD-42036
refinement:
raw
alternateIdentifiers:
42036
keywords:
functional genomics
dateModified:
05-07-2013
availability:
available
types:
gene expression
name:
Enterococcus faecalis V583
ID:
A-GEOD-16245
name:
[Gilmorea520187F] Affymetrix Custom Array - Gilmore SLARE E. faecalis
accessURL: https://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42036/E-GEOD-42036.raw.1.zip
storedIn:
ArrayExpress
qualifier:
gzip compressed
format:
TXT
accessType:
download
authentication:
none
authorization:
none
accessURL: https://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42036/E-GEOD-42036.processed.1.zip
storedIn:
ArrayExpress
qualifier:
gzip compressed
format:
TXT
accessType:
download
authentication:
none
authorization:
none
accessURL: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE42036
storedIn:
Gene Expression Omnibus
qualifier:
not compressed
format:
HTML
accessType:
landing page
primary:
true
authentication:
none
authorization:
none
abbreviation:
EBI
homePage: http://www.ebi.ac.uk/
ID:
SCR:004727
name:
European Bioinformatics Institute
homePage: https://www.ebi.ac.uk/arrayexpress/
ID:
SCR:002964
name:
ArrayExpress

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