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Title: Xenorhabdus nematophila FliZ regulon identification by RNA-Seq      
dateReleased:
05-27-2013
description:
A fliZ mutant in the entomopathogenic bacterium X. nematophila is attenuated in virulence in the insect. The goal of this study is to compare transcriptomes of the fliZ mutant and wild type strain to identify the FliZ regulon. Two biological replicates of total RNA from exponential cultures of WT strain and fliZ mutant were analysed by deep sequencing, using Illumina HiSeq 2000.
privacy:
not applicable
aggregation:
instance of dataset
ID:
E-GEOD-47365
refinement:
raw
alternateIdentifiers:
47365
keywords:
functional genomics
dateModified:
05-03-2014
availability:
available
types:
gene expression
name:
Xenorhabdus nematophila
accessURL: https://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47365/E-GEOD-47365.raw.1.zip
storedIn:
ArrayExpress
qualifier:
gzip compressed
format:
TXT
accessType:
download
authentication:
none
authorization:
none
accessURL: https://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47365/E-GEOD-47365.processed.1.zip
storedIn:
ArrayExpress
qualifier:
gzip compressed
format:
TXT
accessType:
download
authentication:
none
authorization:
none
accessURL: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE47365
storedIn:
Gene Expression Omnibus
qualifier:
not compressed
format:
HTML
accessType:
landing page
primary:
true
authentication:
none
authorization:
none
abbreviation:
EBI
homePage: http://www.ebi.ac.uk/
ID:
SCR:004727
name:
European Bioinformatics Institute
homePage: https://www.ebi.ac.uk/arrayexpress/
ID:
SCR:002964
name:
ArrayExpress
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