Mountain View
biomedical and healthCAre Data Discovery Index Ecosystem
help Advanced Search
Title: Eip74EF-GFP_8-16h_embryonic_ChIP-seq      
dateReleased:
08-11-2013
description:
modENCODE_submission_4976 This submission comes from a modENCODE project of Kevin White. For full list of modENCODE projects, see Project Goal: The White Lab is aiming to map the association of all the Transcription Factors (TF) on the genome of Drosophila melanogaster. One technique that we use for this purpose is chromatin immunoprecipitation coupled with deep sequencing (ChIP-seq) utilizing an Illumina next generation sequencing platform. The data generated by ChIP-seq experiments consist basically of a plot of signal intensity across the genome. The highest signals correspond to positions in the genome occupied by the tested TF. For data usage terms and conditions, please refer to and EXPERIMENT TYPE: CHIP-seq. BIOLOGICAL SOURCE: Strain: Eip74EF-GFP; Developmental Stage: Embryo 8-16h; Genotype: PBac{y[+]-attP-3B}VK00037; Transgene: Eip74EF genomic coding region; EXPERIMENTAL FACTORS: Developmental Stage Embryo 8-16h; Target gene Eip74EF; Strain Eip74EF-GFP; Antibody GFP ab290 (target is Green Fluorescent Protein)
privacy:
not applicable
aggregation:
instance of dataset
ID:
E-GEOD-49769
refinement:
raw
alternateIdentifiers:
49769
keywords:
functional genomics
dateModified:
06-03-2014
availability:
available
types:
gene expression
name:
Drosophila melanogaster
accessURL: https://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49769/E-GEOD-49769.raw.1.zip
storedIn:
ArrayExpress
qualifier:
gzip compressed
format:
TXT
accessType:
download
authentication:
none
authorization:
none
accessURL: https://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49769/E-GEOD-49769.processed.1.zip
storedIn:
ArrayExpress
qualifier:
gzip compressed
format:
TXT
accessType:
download
authentication:
none
authorization:
none
accessURL: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE49769
storedIn:
Gene Expression Omnibus
qualifier:
not compressed
format:
HTML
accessType:
landing page
primary:
true
authentication:
none
authorization:
none
abbreviation:
EBI
homePage: http://www.ebi.ac.uk/
ID:
SCR:004727
name:
European Bioinformatics Institute
homePage: https://www.ebi.ac.uk/arrayexpress/
ID:
SCR:002964
name:
ArrayExpress

Feedback?

If you are having problems using our tools, or if you would just like to send us some feedback, please post your questions on GitHub.