biomedical and healthCAre Data Discovery Index Ecosystem
biomedical and healthCAre Data Discovery Index Ecosystem
| Title: | seq-SDQ4625_T09A5.8_FEM2_AD
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| dateReleased: |
08-28-2013
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| description: |
modENCODE_submission_6007 This submission comes from a modENCODE project of Jason Lieb. For full list of modENCODE projects, see Project Goal: The focus of our analysis will be elements that specify nucleosome positioning and occupancy, control domains of gene expression, induce repression of the X chromosome, guide mitotic segregation and genome duplication, govern homolog pairing and recombination during meiosis, and organize chromosome positioning within the nucleus. Our 126 strategically selected targets include RNA polymerase II isoforms, dosage-compensation proteins, centromere components, homolog-pairing facilitators, recombination markers, and nuclear-envelope constituents. We will integrate information generated with existing knowledge on the biology of the targets and perform ChIP-seq analysis on mutant and RNAi extracts lacking selected target proteins. For data usage terms and conditions, please refer to and EXPERIMENT TYPE: CHIP-seq. BIOLOGICAL SOURCE: Strain: fem-2(b245); Developmental Stage: Germline containing young adult; Genotype: fem-2(b245)III; Sex: Hermaphrodite; EXPERIMENTAL FACTORS: Developmental Stage Germline containing young adult; temp (temperature) 20 degree celsius; Strain fem-2(b245); Antibody T09A5.8 SDQ4625 (target is T09A5.8)
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| privacy: |
not applicable
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| aggregation: |
instance of dataset
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| ID: |
E-GEOD-50299
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| refinement: |
raw
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| alternateIdentifiers: |
50299
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| keywords: |
functional genomics
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| dateModified: |
06-03-2014
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| availability: |
available
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| types: |
gene expression
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| name: |
Caenorhabditis elegans
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| accessURL: | https://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50299/E-GEOD-50299.raw.1.zip |
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ArrayExpress
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gzip compressed
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download
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| authentication: |
none
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| accessURL: | https://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50299/E-GEOD-50299.processed.1.zip |
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ArrayExpress
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gzip compressed
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download
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| authentication: |
none
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| authorization: |
none
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| accessURL: | https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE50299 |
| storedIn: |
Gene Expression Omnibus
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| qualifier: |
not compressed
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| format: |
HTML
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| accessType: |
landing page
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| primary: |
true
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| authentication: |
none
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| authorization: |
none
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| abbreviation: |
EBI
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| homePage: | http://www.ebi.ac.uk/ |
| ID: |
SCR:004727
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| name: |
European Bioinformatics Institute
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| homePage: | https://www.ebi.ac.uk/arrayexpress/ |
| ID: |
SCR:002964
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| name: |
ArrayExpress
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