biomedical and healthCAre Data Discovery Index Ecosystem
biomedical and healthCAre Data Discovery Index Ecosystem
| Title: | Abd-B-GFP_W3L_ChIP-seq
|
| dateReleased: |
08-28-2013
|
| description: |
modENCODE_submission_4962 This submission comes from a modENCODE project of Kevin White. For full list of modENCODE projects, see Project Goal: The White Lab is aiming to map the association of all the Transcription Factors (TF) on the genome of Drosophila melanogaster. One technique that we use for this purpose is chromatin immunoprecipitation coupled with deep sequencing (ChIP-seq) utilizing an Illumina next generation sequencing platform. The data generated by ChIP-seq experiments consist basically of a plot of signal intensity across the genome. The highest signals correspond to positions in the genome occupied by the tested TF. For data usage terms and conditions, please refer to and EXPERIMENT TYPE: CHIP-seq. BIOLOGICAL SOURCE: Strain: Abd-B-GFP; Developmental Stage: L3; Genotype: w; PBac{y[+]-attP-3B}VK00037; Sex: Unknown; Transgene: Abd-B genomic coding region with stop codon replaced with GFP; EXPERIMENTAL FACTORS: Developmental Stage L3; Target gene Abd-B; Strain Abd-B-GFP; Antibody GFP ab290 (target is Green Fluorescent Protein)
|
| privacy: |
not applicable
|
| aggregation: |
instance of dataset
|
| ID: |
E-GEOD-50363
|
| refinement: |
raw
|
| alternateIdentifiers: |
50363
|
| keywords: |
functional genomics
|
| dateModified: |
06-03-2014
|
| availability: |
available
|
| types: |
gene expression
|
| name: |
Drosophila melanogaster
|
| accessURL: | https://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50363/E-GEOD-50363.raw.1.zip |
| storedIn: |
ArrayExpress
|
| qualifier: |
gzip compressed
|
| format: |
TXT
|
| accessType: |
download
|
| authentication: |
none
|
| authorization: |
none
|
| accessURL: | https://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50363/E-GEOD-50363.processed.1.zip |
| storedIn: |
ArrayExpress
|
| qualifier: |
gzip compressed
|
| format: |
TXT
|
| accessType: |
download
|
| authentication: |
none
|
| authorization: |
none
|
| accessURL: | https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE50363 |
| storedIn: |
Gene Expression Omnibus
|
| qualifier: |
not compressed
|
| format: |
HTML
|
| accessType: |
landing page
|
| primary: |
true
|
| authentication: |
none
|
| authorization: |
none
|
| abbreviation: |
EBI
|
| homePage: | http://www.ebi.ac.uk/ |
| ID: |
SCR:004727
|
| name: |
European Bioinformatics Institute
|
| homePage: | https://www.ebi.ac.uk/arrayexpress/ |
| ID: |
SCR:002964
|
| name: |
ArrayExpress
|