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Title: Deep sequencing of HetR-bound DNA reveals novel HetR targets in Anabaena sp. strain PCC 7120      
dateReleased:
10-31-2013
description:
We employed chromatin pull-down and deep sequencing to globally identify HetR DNA targets in vivo at 6 hours after fixed-nitrogen deprivation. We identified novel DNA binding targets of tagged HetR-6xHis and defined a consensus HetR binding site from these HetR target sequences. Chromatin pull down of hetR mutant strain UHM103 carrying pAM4375, which expresses HetR-6xHis, and a wild-type control. One dataset was collected.
privacy:
not applicable
aggregation:
instance of dataset
ID:
E-GEOD-51886
refinement:
raw
alternateIdentifiers:
51886
keywords:
functional genomics
dateModified:
05-03-2014
availability:
available
types:
gene expression
name:
Nostoc sp. PCC 7120
accessURL: https://www.ebi.ac.uk/arrayexpress/files/E-GEOD-51886/E-GEOD-51886.raw.1.zip
storedIn:
ArrayExpress
qualifier:
gzip compressed
format:
TXT
accessType:
download
authentication:
none
authorization:
none
accessURL: https://www.ebi.ac.uk/arrayexpress/files/E-GEOD-51886/E-GEOD-51886.processed.1.zip
storedIn:
ArrayExpress
qualifier:
gzip compressed
format:
TXT
accessType:
download
authentication:
none
authorization:
none
accessURL: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE51886
storedIn:
Gene Expression Omnibus
qualifier:
not compressed
format:
HTML
accessType:
landing page
primary:
true
authentication:
none
authorization:
none
abbreviation:
EBI
homePage: http://www.ebi.ac.uk/
ID:
SCR:004727
name:
European Bioinformatics Institute
homePage: https://www.ebi.ac.uk/arrayexpress/
ID:
SCR:002964
name:
ArrayExpress
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