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Title: Transcriptome analysis of Paracoccus denitrificans during Cu-limitation      
dateReleased:
11-18-2013
description:
Transcriptional profiling of Paracoccus denitrificans PD1222 wild type grown to mid-exponential phase in minimal media with either 13 uM (Cu-H) or 0.5 uM (Cu-L) Cu regimes. The goal was to define the effects of Cu-limitation on denitrification genes Two growth conditions, three biological replicates of each condition. Each sample hybridised in a two-channel hybridization against Paracoccus denitrificans genomic DNA as the comparator/reference, which also acted as a control for spot quality. Cu-concentration 13 uM (Cu-H) versus 0.5 uM Cu (Cu-L) in anaerobic growth conditions.
privacy:
not applicable
aggregation:
instance of dataset
ID:
E-GEOD-48577
refinement:
raw
alternateIdentifiers:
48577
keywords:
functional genomics
dateModified:
06-03-2014
availability:
available
types:
gene expression
name:
Paracoccus denitrificans PD1222
ID:
A-GEOD-17412
name:
Agilent-026990 Paracoccus denitrificans
accessURL: https://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48577/E-GEOD-48577.raw.1.zip
storedIn:
ArrayExpress
qualifier:
gzip compressed
format:
TXT
accessType:
download
authentication:
none
authorization:
none
accessURL: https://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48577/E-GEOD-48577.processed.1.zip
storedIn:
ArrayExpress
qualifier:
gzip compressed
format:
TXT
accessType:
download
authentication:
none
authorization:
none
accessURL: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE48577
storedIn:
Gene Expression Omnibus
qualifier:
not compressed
format:
HTML
accessType:
landing page
primary:
true
authentication:
none
authorization:
none
abbreviation:
EBI
homePage: http://www.ebi.ac.uk/
ID:
SCR:004727
name:
European Bioinformatics Institute
homePage: https://www.ebi.ac.uk/arrayexpress/
ID:
SCR:002964
name:
ArrayExpress
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