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Title: Comparison between GT and rre37 overexpressed strains of cyanobacteria      
dateReleased:
11-30-2013
description:
Rre37 activates sugar catabolism in a unicelluar cyanobacterium Synechocystis sp. PCC6803. We constructed rre37-overexpressing strain, named ROX370, by introducing the rre37 genes fusing psbAII promoter by homologous recombination. The transcript profiles of parental wild-type strain GT and ROX370 were compared by microarray CyanoChip (Takrara bio.). Experiments were performed by three times with biologically independent RNA. The results showed that genes for the oxidaditive pentose phosphate pathway and glycogen catabolism were induced by rre37 overexpression. Total RNAs from three independent wild-type (GT) and three independent rre37-overexpression strains were differently labeled by Cy3 or Cy5, followed by hybridyzation on CyanoChip.
privacy:
not applicable
aggregation:
instance of dataset
ID:
E-GEOD-47091
refinement:
raw
alternateIdentifiers:
47091
keywords:
functional genomics
dateModified:
12-09-2013
availability:
available
types:
gene expression
name:
Synechocystis sp. PCC 6803
ID:
A-GEOD-13193
name:
CyanoChip Ver.1.6 (Takara bio.)
accessURL: https://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47091/E-GEOD-47091.raw.1.zip
storedIn:
ArrayExpress
qualifier:
gzip compressed
format:
TXT
accessType:
download
authentication:
none
authorization:
none
accessURL: https://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47091/E-GEOD-47091.processed.1.zip
storedIn:
ArrayExpress
qualifier:
gzip compressed
format:
TXT
accessType:
download
authentication:
none
authorization:
none
accessURL: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE47091
storedIn:
Gene Expression Omnibus
qualifier:
not compressed
format:
HTML
accessType:
landing page
primary:
true
authentication:
none
authorization:
none
abbreviation:
EBI
homePage: http://www.ebi.ac.uk/
ID:
SCR:004727
name:
European Bioinformatics Institute
homePage: https://www.ebi.ac.uk/arrayexpress/
ID:
SCR:002964
name:
ArrayExpress

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