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Title: Transcription profiling by high throughput sequencing of Arabidopsis atclb1-1 loss of function mutant      
dateReleased:
12-15-2013
description:
Since AtCLB act as a negative regulator of abiotic stress response, we asked the question as to what additional factors might be contributing towards stress tolerance in Atclb1-1 loss of function mutants. One approach to find answers to this question would be to see which pathways or genes are being affected in mutant plants due to the disruption of AtCLB gene function. To achieve this, we sought a global transcriptome profiling of the mutant plant in comparison to its wild type counterpart. We analyzed the Atclb1-1 loss of function mutant and wild type Arabidopsis transcriptomes by RNA sequencing in an Illumina genome analyzer platform. From the analysis, we grouped all differentially expressed genes into various functional categories based on their biological process, molecular function and cellular component
privacy:
not applicable
aggregation:
instance of dataset
ID:
E-GEOD-48851
refinement:
raw
alternateIdentifiers:
48851
keywords:
functional genomics
dateModified:
02-26-2016
availability:
available
types:
gene expression
name:
Arabidopsis thaliana
accessURL: https://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48851/E-GEOD-48851.raw.1.zip
storedIn:
ArrayExpress
qualifier:
gzip compressed
format:
TXT
accessType:
download
authentication:
none
authorization:
none
accessURL: https://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48851/E-GEOD-48851.processed.1.zip
storedIn:
ArrayExpress
qualifier:
gzip compressed
format:
TXT
accessType:
download
authentication:
none
authorization:
none
accessURL: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE48851
storedIn:
Gene Expression Omnibus
qualifier:
not compressed
format:
HTML
accessType:
landing page
primary:
true
authentication:
none
authorization:
none
abbreviation:
EBI
homePage: http://www.ebi.ac.uk/
ID:
SCR:004727
name:
European Bioinformatics Institute
homePage: https://www.ebi.ac.uk/arrayexpress/
ID:
SCR:002964
name:
ArrayExpress
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