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Title: Transcriptome analysis of the phytopathogen Xylella fastidiosa in response to salt and osmotic stress      
dateReleased:
05-25-2014
description:
The global transcriptional response of the phytopathogenic bacterium X. fastidiosa to a sudden increase in salinity and osmolarity of the medium was investigated using DNA microarrays. Time-course experiments were carried out by exposing bacterial cells to high salinity (250 mM NaCl) and high osmolarity (300 mM sucrose) conditions revealing 142 upregulated genes under both stresses, including pathogenicity related genes, genes encoding transcriptional regulators, as well as genes related to DNA metabolism and mobile genetic elements. In addition, 38 genes were downregulated under both conditions, most of them related to ribosomal and heat shock proteins. A total of 192 genes were upregulated exclusively in the presence of NaCl, including genes encoding transporters, genes involved in oxidative-stress response and genes related to cell structure. A smaller number of genes (44 genes) were induced only in the presence of sucrose, most of them encoding hypothetical and conserved hypothetical proteins. Interestingly, 57% of the genes differentially expressed under both stress conditions have no putative function assigned, emphasizing the importance of high-throughput experiments to start the characterization of these genes in X. fastidiosa. Keywords: stress response, osmotic and salt stress Direct comparison between osmotic or salt stress condition and control (29oC) condition. Some hybridizations are dye-swaped. There are at least 3 biological replicates (independent harvest) and 2 technical replicates of each array (L - left and R - right).
privacy:
not applicable
aggregation:
instance of dataset
ID:
E-GEOD-7126
refinement:
raw
alternateIdentifiers:
7126
keywords:
functional genomics
dateModified:
06-03-2014
availability:
available
types:
gene expression
name:
Xylella fastidiosa
ID:
A-GEOD-2708
name:
Xylella USP microarray v2 (Koide et al. 2004 J.Bact.)
accessURL: https://www.ebi.ac.uk/arrayexpress/files/E-GEOD-7126/E-GEOD-7126.raw.1.zip
storedIn:
ArrayExpress
qualifier:
gzip compressed
format:
TXT
accessType:
download
authentication:
none
authorization:
none
accessURL: https://www.ebi.ac.uk/arrayexpress/files/E-GEOD-7126/E-GEOD-7126.processed.1.zip
storedIn:
ArrayExpress
qualifier:
gzip compressed
format:
TXT
accessType:
download
authentication:
none
authorization:
none
accessURL: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE7126
storedIn:
Gene Expression Omnibus
qualifier:
not compressed
format:
HTML
accessType:
landing page
primary:
true
authentication:
none
authorization:
none
abbreviation:
EBI
homePage: http://www.ebi.ac.uk/
ID:
SCR:004727
name:
European Bioinformatics Institute
homePage: https://www.ebi.ac.uk/arrayexpress/
ID:
SCR:002964
name:
ArrayExpress

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