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Title: The microbial functional structure along an elevation gradient of the Shennongjia Mountain as characterized by GeoChip      
dateReleased:
06-13-2014
description:
Known as “The Oriental Botanic Garden” and the natural gene bank of biological species, Shennongjia is one of the most biologically diverse areas in China and a member of UNESCO's World Network of Biosphere Reserves. The macro-organism resources of shennongjia have been deeply explored. However, the microbial community structure was scarcely detected. In this study, we aim to detedect the microbial community along six sites of Shennonajia Mountain and explore the major controlling factor in shaping microbial community with a microarray-based metagenomics tool named GeoChip 4.2. Seventy-three samples were collected from six sites along the Shennongjia Mountain, with 5-15 replicates in every site
privacy:
not applicable
aggregation:
instance of dataset
ID:
E-GEOD-58433
refinement:
raw
alternateIdentifiers:
58433
keywords:
functional genomics
dateModified:
06-21-2014
availability:
available
types:
gene expression
name:
uncultured soil microorganism
ID:
A-GEOD-18787
name:
GeoChip 4.2
accessURL: https://www.ebi.ac.uk/arrayexpress/files/E-GEOD-58433/E-GEOD-58433.raw.1.zip
storedIn:
ArrayExpress
qualifier:
gzip compressed
format:
TXT
accessType:
download
authentication:
none
authorization:
none
accessURL: https://www.ebi.ac.uk/arrayexpress/files/E-GEOD-58433/E-GEOD-58433.processed.1.zip
storedIn:
ArrayExpress
qualifier:
gzip compressed
format:
TXT
accessType:
download
authentication:
none
authorization:
none
accessURL: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE58433
storedIn:
Gene Expression Omnibus
qualifier:
not compressed
format:
HTML
accessType:
landing page
primary:
true
authentication:
none
authorization:
none
abbreviation:
EBI
homePage: http://www.ebi.ac.uk/
ID:
SCR:004727
name:
European Bioinformatics Institute
homePage: https://www.ebi.ac.uk/arrayexpress/
ID:
SCR:002964
name:
ArrayExpress
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