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Title: Gene expression levels in Rhizosphere Originating Biocontrol Strain Pseudomonas aeruginosa M18 producing different amounts of phenazine-1-carboxylate acid (PCA)      
dateReleased:
07-02-2014
description:
To further understand the gene expression characteristics of originating biocontrol strain Pseudomonas aeruginosa M18, we have applied whole genome microarray expression profiling as a discovery platform to to specify the PCA-dependent expression of M18 genome. We constructed a series of PCA-producing mutant strains (high PCA: M18MSU1; low PCA: M18MS; and no PCA: M18MSP1P2). The comparison analysis of the M18 mutants genome expressional profiles indicated that the expression of PCA in both M18MSU1 and M18MS alters the expression of a total of 545 different genes; however, the higher level of PCA in M18MSU1 altered more genes (489) as compared to M18MS (129). Cells were grown to OD600=5.0 (exponential phase) in PPM medium at 28℃. Three independent experiments were performed at each time.
privacy:
not applicable
aggregation:
instance of dataset
ID:
E-GEOD-58981
refinement:
raw
alternateIdentifiers:
58981
keywords:
functional genomics
dateModified:
07-16-2014
availability:
available
types:
gene expression
name:
Pseudomonas aeruginosa
ID:
A-GEOD-18885
name:
Agilent-027234 custom_Pseudomonas sp. M18_ 8*15K [Probe name version]
accessURL: https://www.ebi.ac.uk/arrayexpress/files/E-GEOD-58981/E-GEOD-58981.raw.1.zip
storedIn:
ArrayExpress
qualifier:
gzip compressed
format:
TXT
accessType:
download
authentication:
none
authorization:
none
accessURL: https://www.ebi.ac.uk/arrayexpress/files/E-GEOD-58981/E-GEOD-58981.processed.1.zip
storedIn:
ArrayExpress
qualifier:
gzip compressed
format:
TXT
accessType:
download
authentication:
none
authorization:
none
accessURL: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE58981
storedIn:
Gene Expression Omnibus
qualifier:
not compressed
format:
HTML
accessType:
landing page
primary:
true
authentication:
none
authorization:
none
abbreviation:
EBI
homePage: http://www.ebi.ac.uk/
ID:
SCR:004727
name:
European Bioinformatics Institute
homePage: https://www.ebi.ac.uk/arrayexpress/
ID:
SCR:002964
name:
ArrayExpress
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