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Title: Transcriptomic profiling of rice (Oryza sativa) cv. Sijung and Jumli Marshi during early chilling stress      
dateReleased:
11-30-2014
description:
The aim of this study was to conduct global gene expression profiling and comparative analysis of two chilling tolerant rice varieties, Jumli Marshi and Sijung (spp. Japonica), during early chilling stress (24h, 10C). Leaf tissue from cv. Jumli Marshi and cv. Sijung plants grown under chilling stress conditions were harvested after 4 and 24 h. Control plants (0 h) were harvested at the beginning of the experiment, i.e., at mid-day. Three biological replicates were profiled for each time point and variety. In order to readily detect highly (saturated) as well as weakly (near background signal) expressed genes, scanning was done twice on the microarrays: at the PMT sensitivity level 100% (pmt100) and 10% (pmt10).
privacy:
not applicable
aggregation:
instance of dataset
ID:
E-MTAB-3121
refinement:
raw
dateSubmitted:
03-31-2008
keywords:
functional genomics
dateModified:
11-26-2014
availability:
available
types:
gene expression
name:
Oryza sativa
ID:
A-GEOD-8852
name:
Agilent rice genome 4X44k array
accessURL: https://www.ebi.ac.uk/arrayexpress/files/E-MTAB-3121/E-MTAB-3121.raw.1.zip
storedIn:
ArrayExpress
qualifier:
gzip compressed
format:
TXT
accessType:
download
authentication:
none
authorization:
none
accessURL: https://www.ebi.ac.uk/arrayexpress/files/E-MTAB-3121/E-MTAB-3121.processed.1.zip
storedIn:
ArrayExpress
qualifier:
gzip compressed
format:
TXT
accessType:
download
authentication:
none
authorization:
none
abbreviation:
EBI
homePage: http://www.ebi.ac.uk/
ID:
SCR:004727
name:
European Bioinformatics Institute
homePage: https://www.ebi.ac.uk/arrayexpress/
ID:
SCR:002964
name:
ArrayExpress

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