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Title: Differential DNA methylation profiles of coding and non-coding genes define hippocampal sclerosis in human temporal lobe epilepsy      
dateReleased:
12-01-2014
description:
Methylation profiling was carried using Methylated DNA immunoprecipitation coupled with CpG island plus promoter array for human tissue samples. The samples, i.e. immunoprecipitate & input after immunoprecipitation were deferentially labelled using Cy5 & Cy3 flourophores. These were subsequently hybridized on the arrays and thereafter washed and scanned. The samples used for this study Hippocampal tissue was scored according to the Watson hippocampal sclerosis grading system- Watson Grade 1 or 4. Control tissue (labelled as Control in disease staging) was obtained from the NICHD Brain and Tissue Bank for Developmental Disorders at the University of Maryland, Baltimore, MD.
privacy:
not applicable
aggregation:
instance of dataset
ID:
E-MTAB-3054
refinement:
raw
dateSubmitted:
07-01-2012
keywords:
functional genomics
dateModified:
11-03-2014
creators:
Sudipto Das
availability:
available
types:
gene expression
name:
Homo sapiens
name:
disease state design
ID:
A-MTAB-527
name:
100718_HG18_CpG_Refseq_Prom_MeDIP
accessURL: https://www.ebi.ac.uk/arrayexpress/files/E-MTAB-3054/E-MTAB-3054.raw.1.zip
storedIn:
ArrayExpress
qualifier:
gzip compressed
format:
TXT
accessType:
download
authentication:
none
authorization:
none
accessURL: https://www.ebi.ac.uk/arrayexpress/files/E-MTAB-3054/E-MTAB-3054.processed.1.zip
storedIn:
ArrayExpress
qualifier:
gzip compressed
format:
TXT
accessType:
download
authentication:
none
authorization:
none
abbreviation:
EBI
homePage: http://www.ebi.ac.uk/
ID:
SCR:004727
name:
European Bioinformatics Institute
homePage: https://www.ebi.ac.uk/arrayexpress/
ID:
SCR:002964
name:
ArrayExpress

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