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Title: Open chromatin in human pancreatic islets (FAIRE-seq) - Appendix to E-GEOD-17616      
dateReleased:
12-23-2014
description:
An appendix to the published Gaulton et al. work (PMID: 20118932; E-GEOD-17616). In the original paper, the authors note that samples 1 and 2 are not as pure as the third sample. This appendix provides FAIRE-Seq data obtained from a purified islet sample to replace the problematic published data. The goal of the original experiment was to identify active regulatory DNA in human pancreatic islets. This was accomplished using high-throughput sequencing of genomic regions isolated using FAIRE from three purified pancreatic islet samples to identify sites of open chromatin.
privacy:
not applicable
aggregation:
instance of dataset
ID:
E-MTAB-3199
refinement:
raw
keywords:
functional genomics
dateModified:
12-22-2014
creators:
Jorge Ferrer
availability:
available
types:
gene expression
name:
Homo sapiens
name:
cell type comparison design
accessURL: https://www.ebi.ac.uk/arrayexpress/files/E-MTAB-3199/E-MTAB-3199.raw.1.zip
storedIn:
ArrayExpress
qualifier:
gzip compressed
format:
TXT
accessType:
download
authentication:
none
authorization:
none
accessURL: https://www.ebi.ac.uk/arrayexpress/files/E-MTAB-3199/E-MTAB-3199.processed.1.zip
storedIn:
ArrayExpress
qualifier:
gzip compressed
format:
TXT
accessType:
download
authentication:
none
authorization:
none
abbreviation:
EBI
homePage: http://www.ebi.ac.uk/
ID:
SCR:004727
name:
European Bioinformatics Institute
homePage: https://www.ebi.ac.uk/arrayexpress/
ID:
SCR:002964
name:
ArrayExpress

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