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Title: Transcription profiling by high throughput sequencing of soybean leaf abscission zone and petioles without the abscission zone after 0, 12, 24, 48, and 72 h of exposure to ethylene      
dateReleased:
02-06-2015
description:
Soybean (Glycine max, cv Williams82) leaf petiole explants exposed to 25 ul/l ethylene for 0 to 72 h. Explants were prepared from 21 day-old greenhouse grown plants. Leaf abscission zones (LAZ) consisted of 2 mm of tissue collected below the leaf blade. The petioles (NAZ) consisted of approximately 3 to 4 mm of petiole tissue with the AZ removed. Explants and tissue were collected in February, March and April of 2013. Tissue and RNA were collected at USDA, Beltsville, MD (Mark L Tucker, Joonyup Kim and Ronghui Yang). Library construction and sequencing was completed at Univ of Cornell, Itheca, NY using a Illumina HiSeq 2000 (James J Giovannoni and Zhangjun Fei).
privacy:
not applicable
aggregation:
instance of dataset
ID:
E-MTAB-5066
refinement:
raw
keywords:
functional genomics
dateModified:
08-23-2016
creators:
Mark Tucker
availability:
available
types:
gene expression
name:
Glycine max
accessURL: https://www.ebi.ac.uk/arrayexpress/files/E-MTAB-5066/E-MTAB-5066.raw.1.zip
storedIn:
ArrayExpress
qualifier:
gzip compressed
format:
TXT
accessType:
download
authentication:
none
authorization:
none
accessURL: https://www.ebi.ac.uk/arrayexpress/files/E-MTAB-5066/E-MTAB-5066.processed.1.zip
storedIn:
ArrayExpress
qualifier:
gzip compressed
format:
TXT
accessType:
download
authentication:
none
authorization:
none
abbreviation:
EBI
homePage: http://www.ebi.ac.uk/
ID:
SCR:004727
name:
European Bioinformatics Institute
homePage: https://www.ebi.ac.uk/arrayexpress/
ID:
SCR:002964
name:
ArrayExpress
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