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Title: Large-scale characterization of DNA binding landscape of eukaryotic C2H2 zinc fingers      
dateReleased:
02-17-2015
description:
This SuperSeries is composed of the SubSeries listed below. Cys2-His2 zinc finger (C2H2-ZF) proteins represent the largest class of putative human transcription factors (TFs). However, it is unknown whether most C2H2-ZFs even bind DNA, or what sequences they bind. Using a combination of bacterial one-hybrid (B1H) assays, protein-binding microarrays (PBMs), and ChIP-seq, we have found that most natural C2H2-ZFs bind DNA both in vitro and in vivo. This SuperSeries contains the data for identification of C2H2-ZF binding preferences using these three approaches. Refer to individual Series
privacy:
not applicable
aggregation:
instance of dataset
ID:
E-GEOD-52523
refinement:
raw
alternateIdentifiers:
52523
keywords:
functional genomics
dateModified:
02-21-2015
availability:
available
types:
gene expression
name:
synthetic construct
ID:
A-GEOD-11260
name:
Agilent custom ME and HK design array [8mer]
accessURL: https://www.ebi.ac.uk/arrayexpress/files/E-GEOD-52523/E-GEOD-52523.raw.1.zip
storedIn:
ArrayExpress
qualifier:
gzip compressed
format:
TXT
accessType:
download
authentication:
none
authorization:
none
accessURL: https://www.ebi.ac.uk/arrayexpress/files/E-GEOD-52523/E-GEOD-52523.processed.1.zip
storedIn:
ArrayExpress
qualifier:
gzip compressed
format:
TXT
accessType:
download
authentication:
none
authorization:
none
accessURL: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE52523
storedIn:
Gene Expression Omnibus
qualifier:
not compressed
format:
HTML
accessType:
landing page
primary:
true
authentication:
none
authorization:
none
abbreviation:
EBI
homePage: http://www.ebi.ac.uk/
ID:
SCR:004727
name:
European Bioinformatics Institute
homePage: https://www.ebi.ac.uk/arrayexpress/
ID:
SCR:002964
name:
ArrayExpress

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