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Title: Using the Porcine SNP60k array to discover copy number variations in high and low fertility boars      
dateReleased:
02-21-2015
description:
The raw data from the Porcine SNP60k array was used to discover copy number variations in high and low fertile breeding boars. Analysis was done in SNP and Variation Suite ver. 7.7.8. (SVS, GoldenHelix Inc.) Results were published in Revay et al., BMC Genomics 2015 Arrays were performed on 13 Landrace, 3 Duroc and 20 Yorkshire boars of high and low fertility by the service provider DNA Landmarks.
privacy:
not applicable
aggregation:
instance of dataset
ID:
E-GEOD-66170
refinement:
raw
alternateIdentifiers:
66170
keywords:
functional genomics
dateModified:
02-28-2015
availability:
available
types:
gene expression
name:
Sus scrofa
ID:
A-GEOD-11379
name:
Illumina Porcine SNP60 BeadChip (WG-410)
accessURL: https://www.ebi.ac.uk/arrayexpress/files/E-GEOD-66170/E-GEOD-66170.raw.1.zip
storedIn:
ArrayExpress
qualifier:
gzip compressed
format:
TXT
accessType:
download
authentication:
none
authorization:
none
accessURL: https://www.ebi.ac.uk/arrayexpress/files/E-GEOD-66170/E-GEOD-66170.processed.1.zip
storedIn:
ArrayExpress
qualifier:
gzip compressed
format:
TXT
accessType:
download
authentication:
none
authorization:
none
accessURL: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE66170
storedIn:
Gene Expression Omnibus
qualifier:
not compressed
format:
HTML
accessType:
landing page
primary:
true
authentication:
none
authorization:
none
abbreviation:
EBI
homePage: http://www.ebi.ac.uk/
ID:
SCR:004727
name:
European Bioinformatics Institute
homePage: https://www.ebi.ac.uk/arrayexpress/
ID:
SCR:002964
name:
ArrayExpress

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