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Title: KDM4A depletion by siRNA in HEK293T cells      
dateReleased:
03-31-2015
description:
The goal of this study was to determine genes affected by depletion of KDM4A in HEK293T cells This data was used in Van Rechem et. al. Cancer Discovery 2014 to demonstrate that depletion of KDM4A did not alter expression of genese associated with translation. The experiment uses two different shRNA constructs; shKDM4A.2 in a pSuper backbone and shKDM4A.6 in a pLKO backbone. A corresponding empty vector control was conducted for each backbone. Each shRNA was compared to its own control.
privacy:
not applicable
aggregation:
instance of dataset
ID:
E-GEOD-63812
refinement:
raw
alternateIdentifiers:
63812
keywords:
functional genomics
dateModified:
04-04-2015
availability:
available
types:
gene expression
name:
Homo sapiens
ID:
A-GEOD-18943
name:
NimbleGen Human Gene Expression 12x135K Array [100718_HG18_opt_expr]
accessURL: https://www.ebi.ac.uk/arrayexpress/files/E-GEOD-63812/E-GEOD-63812.raw.1.zip
storedIn:
ArrayExpress
qualifier:
gzip compressed
format:
TXT
accessType:
download
authentication:
none
authorization:
none
accessURL: https://www.ebi.ac.uk/arrayexpress/files/E-GEOD-63812/E-GEOD-63812.processed.1.zip
storedIn:
ArrayExpress
qualifier:
gzip compressed
format:
TXT
accessType:
download
authentication:
none
authorization:
none
accessURL: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE63812
storedIn:
Gene Expression Omnibus
qualifier:
not compressed
format:
HTML
accessType:
landing page
primary:
true
authentication:
none
authorization:
none
abbreviation:
EBI
homePage: http://www.ebi.ac.uk/
ID:
SCR:004727
name:
European Bioinformatics Institute
homePage: https://www.ebi.ac.uk/arrayexpress/
ID:
SCR:002964
name:
ArrayExpress