Mountain View
biomedical and healthCAre Data Discovery Index Ecosystem
help Advanced Search
Title: Validation experiment of copy number variations identified by next-generation sequencing in chickens (part 2)      
dateReleased:
05-14-2015
description:
Copy number variation (CNV) is important and widespread in the genome, and is a major cause of disease and phenotypic diversity. Herein, we perform a genome-wide analysis of CNVs in the 12 diversified chicken genomes based on next-generation sequencing. We apply aCGH experiments to confirm our predicted CNVs. Results from aCGH agree well with our findings and the Pearson’s correlation values between the test and reference samples range from 0.644 to 0.722. The whole blood samples from Cornish, Rhode Island Red, and White Leghorn
privacy:
not applicable
aggregation:
instance of dataset
ID:
E-GEOD-54118
refinement:
raw
alternateIdentifiers:
54118
keywords:
functional genomics
dateModified:
05-22-2015
availability:
available
types:
gene expression
name:
Gallus gallus
ID:
A-GEOD-18175
name:
Agilent custom 1*1M chicken CGH array
accessURL: https://www.ebi.ac.uk/arrayexpress/files/E-GEOD-54118/E-GEOD-54118.raw.1.zip
storedIn:
ArrayExpress
qualifier:
gzip compressed
format:
TXT
accessType:
download
authentication:
none
authorization:
none
accessURL: https://www.ebi.ac.uk/arrayexpress/files/E-GEOD-54118/E-GEOD-54118.processed.1.zip
storedIn:
ArrayExpress
qualifier:
gzip compressed
format:
TXT
accessType:
download
authentication:
none
authorization:
none
accessURL: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE54118
storedIn:
Gene Expression Omnibus
qualifier:
not compressed
format:
HTML
accessType:
landing page
primary:
true
authentication:
none
authorization:
none
abbreviation:
EBI
homePage: http://www.ebi.ac.uk/
ID:
SCR:004727
name:
European Bioinformatics Institute
homePage: https://www.ebi.ac.uk/arrayexpress/
ID:
SCR:002964
name:
ArrayExpress

Feedback?

If you are having problems using our tools, or if you would just like to send us some feedback, please post your questions on GitHub.