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Title: Development and validation of a mixed-tissue oligo microarray for Atlantic bluefin tuna, Thunnus thynnus (Linnaeus, 1758)      
dateReleased:
08-10-2015
description:
The largest of the tuna species, Atlantic bluefin tuna, Thunnus thynnus (Linnaeus, 1758), inhabits the North Atlantic Ocean and the Mediterranean Sea and is considered to be an endangered species, largely through overfishing. Thus, the development of aquaculture practices independent of wild resources can provide an important contribution towards ensuring security and sustainability of this species in the longer-term. In order to provide a resource for ongoing studies, we have used 454 pyrosequencing technology to sequence a mixed-tissue normalized cDNA library, derived from adult individuals. Transcript sequences were used to develop a novel 15K Agilent oligo microarray for T. thynnus and comparative tissue gene expression profiles were inferred for gill, heart, liver, ovaries and testes.
privacy:
not applicable
aggregation:
instance of dataset
ID:
E-MTAB-3412
refinement:
raw
keywords:
functional genomics
dateModified:
08-09-2015
creators:
Željka Trumbić
availability:
available
types:
gene expression
name:
Thunnus thynnus
ID:
A-MTAB-553
name:
Custom Agilent 8x15K Thunnus thynnus oligo microarray
accessURL: https://www.ebi.ac.uk/arrayexpress/files/E-MTAB-3412/E-MTAB-3412.raw.1.zip
storedIn:
ArrayExpress
qualifier:
gzip compressed
format:
TXT
accessType:
download
authentication:
none
authorization:
none
accessURL: https://www.ebi.ac.uk/arrayexpress/files/E-MTAB-3412/E-MTAB-3412.processed.1.zip
storedIn:
ArrayExpress
qualifier:
gzip compressed
format:
TXT
accessType:
download
authentication:
none
authorization:
none
abbreviation:
EBI
homePage: http://www.ebi.ac.uk/
ID:
SCR:004727
name:
European Bioinformatics Institute
homePage: https://www.ebi.ac.uk/arrayexpress/
ID:
SCR:002964
name:
ArrayExpress

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