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Title: On the relevance of technical variation due to building pools in microarray experiments [Honey bee]      
dateReleased:
09-11-2015
description:
The objective of the study was to assess the technical error due to blending of individual samples into pools in different experimental data sets. The blending error variance component corresponds to random effects for inaccuracies, which were modeled on the logarithmic scale of normalized gene expression. It's estimation based on a linear mixed model, fitted for each transcript. Honey bees showing hygienic behavior towards Varroa-parasitized brood were compared with controls and among each other. Tissues from mushroom body, antennal lobe and Antennae of honey bees were processed for microarray analysis. They were measured as single samples as well as pooled samples from 2 or 4 individuals.
privacy:
not applicable
aggregation:
instance of dataset
ID:
E-GEOD-72943
refinement:
raw
alternateIdentifiers:
72943
keywords:
functional genomics
dateModified:
09-21-2015
availability:
available
types:
gene expression
name:
Apis mellifera
ID:
A-GEOD-20903
name:
UIUC Honey Bee oligo 13K v1
accessURL: https://www.ebi.ac.uk/arrayexpress/files/E-GEOD-72943/E-GEOD-72943.raw.1.zip
storedIn:
ArrayExpress
qualifier:
gzip compressed
format:
TXT
accessType:
download
authentication:
none
authorization:
none
accessURL: https://www.ebi.ac.uk/arrayexpress/files/E-GEOD-72943/E-GEOD-72943.processed.1.zip
storedIn:
ArrayExpress
qualifier:
gzip compressed
format:
TXT
accessType:
download
authentication:
none
authorization:
none
accessURL: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE72943
storedIn:
Gene Expression Omnibus
qualifier:
not compressed
format:
HTML
accessType:
landing page
primary:
true
authentication:
none
authorization:
none
abbreviation:
EBI
homePage: http://www.ebi.ac.uk/
ID:
SCR:004727
name:
European Bioinformatics Institute
homePage: https://www.ebi.ac.uk/arrayexpress/
ID:
SCR:002964
name:
ArrayExpress

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