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Title: RNA sequencing of Bifidobacterium longum subsp. infantis in response to various substrates      
dateReleased:
10-28-2015
description:
The purpose of this project was to determine the whole transcriptome response of Bifidobacterium longum subsp. Infantis to pooled and individual human milk oligosaccharides (HMO) relative to lactose Bacterial isolates grown on lactose, pooled human milk oligosaccharides (HMO), lacto-N-tetraose (LNT), lacto-N-neotetraose (LNnT), 2’fucosyllactose (2’FL), 3-fucosyllactose (3FL), and 6’sialyllactose (6’SL). RNA was extracted and sequenced, in duplicate, on an Illumina HiSeq. Early, mid, and late timepoints in response to pooled HMO were additionally sequenced in duplicate.
privacy:
not applicable
aggregation:
instance of dataset
ID:
E-GEOD-58773
refinement:
raw
alternateIdentifiers:
58773
keywords:
functional genomics
dateModified:
11-24-2015
availability:
available
types:
gene expression
name:
Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 = DSM 20088
accessURL: https://www.ebi.ac.uk/arrayexpress/files/E-GEOD-58773/E-GEOD-58773.raw.1.zip
storedIn:
ArrayExpress
qualifier:
gzip compressed
format:
TXT
accessType:
download
authentication:
none
authorization:
none
accessURL: https://www.ebi.ac.uk/arrayexpress/files/E-GEOD-58773/E-GEOD-58773.processed.1.zip
storedIn:
ArrayExpress
qualifier:
gzip compressed
format:
TXT
accessType:
download
authentication:
none
authorization:
none
accessURL: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE58773
storedIn:
Gene Expression Omnibus
qualifier:
not compressed
format:
HTML
accessType:
landing page
primary:
true
authentication:
none
authorization:
none
abbreviation:
EBI
homePage: http://www.ebi.ac.uk/
ID:
SCR:004727
name:
European Bioinformatics Institute
homePage: https://www.ebi.ac.uk/arrayexpress/
ID:
SCR:002964
name:
ArrayExpress

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