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Title: Transcription profiling by array of Arabidopsis thaliana apex response to light irradiation      
dateReleased:
12-31-2015
description:
Responsive genes in covered apex with light irradiation on rosette leaves are revealed by the expressional profiling. Normalized data is included as an additional file. It was created via the following protocol: The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
privacy:
not applicable
aggregation:
instance of dataset
ID:
E-MTAB-1921
refinement:
raw
keywords:
functional genomics
dateModified:
11-03-2015
creators:
Han Tang
availability:
available
types:
gene expression
name:
Arabidopsis thaliana
name:
Arabidopsis inflorescence is covered as complete dark, whereas rosette leaves are illuminated with light. After three days treatment, covered apices are collected for RNA extraction and microarray analysis.
ID:
A-AFFY-2
name:
Affymetrix GeneChip Arabidopsis Genome [ATH1-121501]
accessURL: https://www.ebi.ac.uk/arrayexpress/files/E-MTAB-1921/E-MTAB-1921.raw.1.zip
storedIn:
ArrayExpress
qualifier:
gzip compressed
format:
TXT
accessType:
download
authentication:
none
authorization:
none
accessURL: https://www.ebi.ac.uk/arrayexpress/files/E-MTAB-1921/E-MTAB-1921.processed.1.zip
storedIn:
ArrayExpress
qualifier:
gzip compressed
format:
TXT
accessType:
download
authentication:
none
authorization:
none
abbreviation:
EBI
homePage: http://www.ebi.ac.uk/
ID:
SCR:004727
name:
European Bioinformatics Institute
homePage: https://www.ebi.ac.uk/arrayexpress/
ID:
SCR:002964
name:
ArrayExpress

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