Mountain View
biomedical and healthCAre Data Discovery Index Ecosystem
help Advanced Search
Title: Expression profile of Pseudomonas aeruginosa ΔgcsR PAO1 using RNA-Seq      
dateReleased:
01-08-2016
description:
The TyrR-like enhancer-binding protein GcsR (or PA2449) was shown to regulate the expression of genes required for glycine metabolism. In order to define the regulon of GcsR we compared the transcriptome of a gcsR deletion mutant of P. aeruginosa PAO1 with that of the wild-type using RNA-Seq. Strains were grown under glycine rich conditions (peptone broth) and their transcriptomes were compared using RNA-Seq.
privacy:
not applicable
aggregation:
instance of dataset
ID:
E-GEOD-76522
refinement:
raw
alternateIdentifiers:
76522
keywords:
functional genomics
dateModified:
01-16-2016
availability:
available
types:
gene expression
name:
Pseudomonas aeruginosa
accessURL: https://www.ebi.ac.uk/arrayexpress/files/E-GEOD-76522/E-GEOD-76522.raw.1.zip
storedIn:
ArrayExpress
qualifier:
gzip compressed
format:
TXT
accessType:
download
authentication:
none
authorization:
none
accessURL: https://www.ebi.ac.uk/arrayexpress/files/E-GEOD-76522/E-GEOD-76522.processed.1.zip
storedIn:
ArrayExpress
qualifier:
gzip compressed
format:
TXT
accessType:
download
authentication:
none
authorization:
none
accessURL: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE76522
storedIn:
Gene Expression Omnibus
qualifier:
not compressed
format:
HTML
accessType:
landing page
primary:
true
authentication:
none
authorization:
none
abbreviation:
EBI
homePage: http://www.ebi.ac.uk/
ID:
SCR:004727
name:
European Bioinformatics Institute
homePage: https://www.ebi.ac.uk/arrayexpress/
ID:
SCR:002964
name:
ArrayExpress

Feedback?

If you are having problems using our tools, or if you would just like to send us some feedback, please post your questions on GitHub.