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Title: microRNA genetic variation, from population analysis to functional implications of allele variants associated with cancer      
dateReleased:
02-23-2016
description:
Total RNA samples from three independent transfection experiments of vectors containing two different allelic variants of 4 miRNAs (hsa-mir-146a, hsa-mir-196a2, hsa-mir-499a, hsa-mir-499b) and an empty vector. The selected variants are cancer associated SNPs located in cancer related miRNAs. The aim of this study is to identify functional explanations for those associations. HeLa cells were used for microarray expression experiments in Agilent SurePrint G3 Human Gene Expression microarrays (8x60k), which target over 60,000 well-annotated RefSeq transcripts starting from 300ng of total RNA. Data were analyzed using the Array File Maker (AFM) 4.0 software package (Array File Maker, Stanford, California).
privacy:
not applicable
aggregation:
instance of dataset
ID:
E-MTAB-3990
refinement:
raw
dateSubmitted:
04-10-2014
keywords:
functional genomics
dateModified:
10-29-2015
creators:
Ignasi Torruella
availability:
available
types:
gene expression
name:
Homo sapiens
name:
genetic modification
ID:
A-MEXP-2320
name:
Agilent SurePrint G3 Human Gene Expression array v2, 8x60k, 384 rows x 164 cols
accessURL: https://www.ebi.ac.uk/arrayexpress/files/E-MTAB-3990/E-MTAB-3990.raw.1.zip
storedIn:
ArrayExpress
qualifier:
gzip compressed
format:
TXT
accessType:
download
authentication:
none
authorization:
none
accessURL: https://www.ebi.ac.uk/arrayexpress/files/E-MTAB-3990/E-MTAB-3990.processed.1.zip
storedIn:
ArrayExpress
qualifier:
gzip compressed
format:
TXT
accessType:
download
authentication:
none
authorization:
none
abbreviation:
EBI
homePage: http://www.ebi.ac.uk/
ID:
SCR:004727
name:
European Bioinformatics Institute
homePage: https://www.ebi.ac.uk/arrayexpress/
ID:
SCR:002964
name:
ArrayExpress

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