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Title: Peripheral Blood Methylation Profiling of Female Crohn’s Disease Patients      
dateReleased:
05-28-2016
description:
Genome wide DNA methylation profiling of female Crohn's disease patients versus healthy female controls. The Illumina Infinium 450k Human DNA methylation Beadchip was used to obtain DNA methylation profiles across approximately 485,000 CpGs in peripheral blood samples. Samples included 25 healthy controls and 18 female patients with histologically confirmed CD. Bisulfite converted DNA from the 43 samples (25 healthy controls and 18 female patients with histologically confirmed CD) were hybridized to the Illumina Infinium 450k Human Methylation Beadchip Please note that three patient samples (Crohn100, Crohn32, and Crohn75) did not pass QC test and were removed from data processing. Therefore, only 15 patient samples are included in the records.
privacy:
not applicable
aggregation:
instance of dataset
ID:
E-GEOD-81961
refinement:
raw
alternateIdentifiers:
81961
keywords:
functional genomics
dateModified:
06-05-2016
availability:
available
types:
gene expression
name:
Homo sapiens
ID:
A-GEOD-16304
name:
Illumina HumanMethylation450 BeadChip [UBC enhanced annotation v1.0]
accessURL: https://www.ebi.ac.uk/arrayexpress/files/E-GEOD-81961/E-GEOD-81961.raw.1.zip
storedIn:
ArrayExpress
qualifier:
gzip compressed
format:
TXT
accessType:
download
authentication:
none
authorization:
none
accessURL: https://www.ebi.ac.uk/arrayexpress/files/E-GEOD-81961/E-GEOD-81961.processed.1.zip
storedIn:
ArrayExpress
qualifier:
gzip compressed
format:
TXT
accessType:
download
authentication:
none
authorization:
none
accessURL: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE81961
storedIn:
Gene Expression Omnibus
qualifier:
not compressed
format:
HTML
accessType:
landing page
primary:
true
authentication:
none
authorization:
none
abbreviation:
EBI
homePage: http://www.ebi.ac.uk/
ID:
SCR:004727
name:
European Bioinformatics Institute
homePage: https://www.ebi.ac.uk/arrayexpress/
ID:
SCR:002964
name:
ArrayExpress

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