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Title: Light and BcLTF2-dependent gene expression profiles in the phytopathogenic fungus Botrytis cinerea      
dateReleased:
06-01-2016
description:
Full transcriptomes of the Botrytis cinerea wild-type strain B0510 and the null-mutant deltaBcLTF2, cultured in continuous darkness or submitted to a light stimulation, were compared to identify light- or/and BcLTF2-dependent genes. The Botrytis cinerea wild-type strain and the null-mutant deltaBcLTF2 were cultured for 54h in continuous darkness ; then, cultures were exposed for 60 min to light before harvest (L) or were harvested after additional 60 min darkness (D). 4 replicates were performed. The 12 total-RNA samples (4 conditions* 3 replicates) were used for hybridization on NimbleGen 4plex gene expression arrays (20,885 gene models from Botrytis cinerea with three 60-mer probes per gene).
privacy:
not applicable
aggregation:
instance of dataset
ID:
E-GEOD-79679
refinement:
raw
alternateIdentifiers:
79679
keywords:
functional genomics
dateModified:
06-04-2016
availability:
available
types:
gene expression
name:
Botrytis cinerea B05.10
ID:
A-GEOD-21663
name:
NimbleGen - Botrytis cinerea - 12*72K [121204_INRA_Botrytis_exp]
accessURL: https://www.ebi.ac.uk/arrayexpress/files/E-GEOD-79679/E-GEOD-79679.raw.1.zip
storedIn:
ArrayExpress
qualifier:
gzip compressed
format:
TXT
accessType:
download
authentication:
none
authorization:
none
accessURL: https://www.ebi.ac.uk/arrayexpress/files/E-GEOD-79679/E-GEOD-79679.processed.1.zip
storedIn:
ArrayExpress
qualifier:
gzip compressed
format:
TXT
accessType:
download
authentication:
none
authorization:
none
accessURL: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE79679
storedIn:
Gene Expression Omnibus
qualifier:
not compressed
format:
HTML
accessType:
landing page
primary:
true
authentication:
none
authorization:
none
abbreviation:
EBI
homePage: http://www.ebi.ac.uk/
ID:
SCR:004727
name:
European Bioinformatics Institute
homePage: https://www.ebi.ac.uk/arrayexpress/
ID:
SCR:002964
name:
ArrayExpress

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