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Title: The histone H3K9 demethylase KDM3A promotes anoikis through transcriptional activation of pro-apoptotic genes BNIP3 and BNIP3L      
dateReleased:
07-29-2016
description:
We isolated and sequenced the shRNA region of a pSM2 retroviral plasmid to identify which shRNAs were enriched in MCF10A cells grown in detached conditions versus the same MCF10A cells that were grown under normal, attached conditions. Comparison of the ratio of shRNA sequences between cells grown under normal conditions versus cells grown in detached conditions.
privacy:
not applicable
aggregation:
instance of dataset
ID:
E-GEOD-80144
refinement:
raw
alternateIdentifiers:
80144
keywords:
functional genomics
dateModified:
08-07-2016
availability:
available
types:
gene expression
name:
synthetic construct
accessURL: https://www.ebi.ac.uk/arrayexpress/files/E-GEOD-80144/E-GEOD-80144.raw.1.zip
storedIn:
ArrayExpress
qualifier:
gzip compressed
format:
TXT
accessType:
download
authentication:
none
authorization:
none
accessURL: https://www.ebi.ac.uk/arrayexpress/files/E-GEOD-80144/E-GEOD-80144.processed.1.zip
storedIn:
ArrayExpress
qualifier:
gzip compressed
format:
TXT
accessType:
download
authentication:
none
authorization:
none
accessURL: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE80144
storedIn:
Gene Expression Omnibus
qualifier:
not compressed
format:
HTML
accessType:
landing page
primary:
true
authentication:
none
authorization:
none
abbreviation:
EBI
homePage: http://www.ebi.ac.uk/
ID:
SCR:004727
name:
European Bioinformatics Institute
homePage: https://www.ebi.ac.uk/arrayexpress/
ID:
SCR:002964
name:
ArrayExpress
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