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Title: All trans-retinoic acid (ATRA) effect on triple negative (TNBC), HER2 positive, and luminal primary breast tumors      
dateReleased:
10-01-2016
description:
We performed whole genome gene expression microarrays on short-term cultures of mammary tumors deriving from diagnostic Tru-cut procedures of patients to evaluate transcriptional response to the retinoid. Tissue slices were challenged with vehicle (DMSO) or ATRA 0.1µm for 48 hours. Included are 1 luminal (LumB, >70% ER+ cells), 1 Her2, and 2 triple negative (TN) primary tumors.
privacy:
not applicable
aggregation:
instance of dataset
ID:
E-MTAB-4983
refinement:
raw
dateSubmitted:
07-01-2016
keywords:
functional genomics
dateModified:
07-28-2016
creators:
MARCO BOLIS
availability:
available
types:
gene expression
name:
Homo sapiens
name:
compound treatment design
ID:
A-MEXP-2320
name:
Agilent SurePrint G3 Human Gene Expression array v2, 8x60k, 384 rows x 164 cols
accessURL: https://www.ebi.ac.uk/arrayexpress/files/E-MTAB-4983/E-MTAB-4983.raw.1.zip
storedIn:
ArrayExpress
qualifier:
gzip compressed
format:
TXT
accessType:
download
authentication:
none
authorization:
none
accessURL: https://www.ebi.ac.uk/arrayexpress/files/E-MTAB-4983/E-MTAB-4983.processed.1.zip
storedIn:
ArrayExpress
qualifier:
gzip compressed
format:
TXT
accessType:
download
authentication:
none
authorization:
none
abbreviation:
EBI
homePage: http://www.ebi.ac.uk/
ID:
SCR:004727
name:
European Bioinformatics Institute
homePage: https://www.ebi.ac.uk/arrayexpress/
ID:
SCR:002964
name:
ArrayExpress

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